Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00509 ATGATGGCTGTGACCTCCAGCTGCAAGGATGCTGCTAGCATGGATAATGGCAAATATGTTAGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTTTATTATGATTGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCCAATATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGAGAGAAACAGAGGAAGGAATCATCACGCCTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGCTGCAGAAACAGGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACGAGTTGTGAGTCAGTGGTTACAAGTGGTCAACAGAATTTGACCCCGCCGCATCCTCCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGCTGCACTGGAGTTGCAGCTCGTGCGTGTGGACTTGTGGGTCTTGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTATCGCGATTGCCGTGCTGTTGACGTTCTAAACGCCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTTTATATGCAGCTCTATGCGCCTACTACTCTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTATGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTAAGAGCAGAAATGCTACCTAGTGGATATTTGATAAGACCTTGTGAAGGCGGTGGATCAATAATTCATATAGTTGATCACATGGATTTAGATCCTTGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGGTACTGGTTGGGGAAGACGACCTGCTGCTCTTCGCGCTCTTAGTCAGAGATTGAGCAGAGGTTTCAACGAAGCAGTAAACGGGTTTACAGATGAGGGATGGTCTTTGTTAGAAAACGACGGCATTGATGATGTTACACTTCTTGTAAACATGTCTAATGGCAAGACAATGATGGGTGCAAATATTTCATATAATAATGGCTTTCCATCTATGAGCAACGCAGTTCTTTGTGCCAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCAGACACCAGTATTGATGCTTACTCAGCTGCAGCAATTAAGACTGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTCACTCTTCCCTTGGCACAAACGGTTGAGCATGAAGAGGCAAGTACCAAATTATTTCCCATGGCGTCCTTATGGATAAACTTATCCTATTGA 1632 46.08 MMAVTSSCKDAASMDNGKYVRYTPEQVEALERLYYDCPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWYRDCRAVDVLNALSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLDPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNGTGWGRRPAALRALSQRLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSNGKTMMGANISYNNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADTSIDAYSAAAIKTGQCGLPGSHAGTFGGQVTLPLAQTVEHEEASTKLFPMASLWINLSY 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2996775 3001226 - Cp4.1LG02g03640.1 Cpe02g00509 464458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00509 543 CDD START_ArGLABRA2_like 156 371 - -
Cpe02g00509 543 CDD homeodomain 18 78 IPR001356 GO:0003677
Cpe02g00509 543 SUPERFAMILY Bet v1-like 161 371 - -
Cpe02g00509 543 Coils Coil 87 114 - -
Cpe02g00509 543 CDD bZIP 70 109 - -
Cpe02g00509 543 Gene3D - 196 373 IPR023393 -
Cpe02g00509 543 ProSiteProfiles START domain profile. 152 366 IPR002913 GO:0008289
Cpe02g00509 543 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 527 IPR044830 GO:0003700
Cpe02g00509 543 SMART START_1 161 371 IPR002913 GO:0008289
Cpe02g00509 543 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cpe02g00509 543 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 527 - -
Cpe02g00509 543 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Cpe02g00509 543 SMART HOX_1 15 81 IPR001356 GO:0003677
Cpe02g00509 543 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Cpe02g00509 543 Pfam START domain 162 370 IPR002913 GO:0008289
Cpe02g00509 543 Gene3D - 10 84 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00509 Cpe06g00492 CCT
Cpe02g00509 Cpe06g00492 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00509 Cpe-Chr2:2996775 Cpe06g00492 Cpe-Chr6:2918408 0 dispersed
Cpe02g00509 Cpe-Chr2:2996775 Cpe06g00487 Cpe-Chr6:2880183 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49010 PF01852 START 1.30E-54 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00509 K09338 - csv:101218438 1034.63