Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00525 ATGTGTTCATCCATCAACAACACTCTGTTCTGTATATATTACCAACAATCTGCTTCTTTTACACTACAACAAAGATTAAACTTGATCATGGAAAAAACAGCTGAGTTCTCTTTTTGTGGGTTTGTGAGATGGATTTTCCAGCCACGATGCAAGTGGTTTAAGAAATCCTCTGTTCATTCATTACCCACAAATACCTCTGAAAATTGCTCTGTTTCGGATGATGCCAAGGCGCCATTGGAACAGGATCGAAGAACCCACCAAAAACCCACTTTGGATCAATCAAGACCTTCGATTTCTCACCAGAAGAATCAAAGTCGGAGGCCTTCCGATGCTGCAAGAATCTCGTTAAGTAATGGGTCAGTTTTGGGTAATTTGAAGCCAATTGGATCGGCGAACTACAGTCCAAGGAATCGACAAGAGATGAATTCAAGTCCAAAACTTGGAGGAAATGGCAATATGGGGAACATTATGAGGAGAAGTTCATGTGAATTAAAGCCGAATGTGTTGAAATCCATGGGAAATGAAGCTTACAAACAGGGGAGATTCGAAGAAGCATTGGCTTTGTATAACAGAGCAATAGCTTTAGATTCAGAGAATCCTGTTTATTATAGCAACAAAGGAGCTTCTTTGATTGCCTTGCATCGTTTCATTGAAGCCATTGAAGAATGCAAGAAGGCATTAAAGATTCAGCCATCATATCAAAGAGCCCATCATCGTTTAGCCACTACCTATCTCAGAATTGGGGAGCCTGAGAAAGCAGTGGCTCACTTGGAACAATCAGGCCCTTACAGTGACATAAACGACATGAACAGAGCTTGTGTTCTTCAGAGCTGTTTGAGTAAGTGTATTGAAGCAAGGAAGCTACAAGATTGGGACACTCTGTTAAAAGAGACCAAATGGGCAATTTCCTCTGTTTCTAATTCAGCTTATAAGATCTACGCTTTGCAAGCTGAGGCCTTGTTGAAGTTCCATAGATATCAAGAGGCTTATGCCATTTACCAAAAGGGTCAAACCCTCGAGCCAAATTTGCTAACCAAGTTATTTAGTGTAGCTGATAGTGCACTTATTTTATCCATTGAGGCACAAGTTTACACGACAATGGGCAGGTTTGAGGAAGCTGTGGCAGCAGCAGAACGATCAACAAGGCTTGATCCAACTAATATGGAGGCTAACAGAGTGGCAAAATGGGCTAAACTTGTTTCATCAGCTAGATTGAGAGGCAATCTACTCTTCAAGGAATCAAGATTTCCAGAAGCCTGTACTGCATACAGTGAAGGATTAGAACACGACCCGTATAACTCGATTTTGCTATGCAACCGAGCAGCATGTCGATCGAAGCTGGGGCGGTACGAGAAAGCTGTTGAAGATTGCACTGCAGCTCTAATGACACAGCCATGTTACAGCAAAGCCAGACACCGCAGAGCTGATTGCAATGCAAAAATGGAGAGATGGGAGGCTTCAATTCAAGATTACGAGGTGTTGATAAGAGAGAGACCAGGAAATGAGGAAGTGGGGAGGGCTCTGTTTGAGGCGCAGCTTCAACTCAGAAAGCAACATGGGGAGGACATCAAAGACTTGAAATTTGGGTGTAATTTGGTGTGTATTTCAAGTTATGAACGTTTTAGGCACTTTGTTACCTCTCCTGGGATGTCGGTGGTTCTGTTTTGCAACAAAAGCTACCAGAAGGAGGGGCTCGAAGTGTTCGAGTCGGTTTACGAGCGGTTTCCGTGGCTAAACTTCCTAAAGGTGGAGGTAGAAGACCATCCTTATTTGGTGAAGTTGGAGGAGGTGAGGTCCATTCCAGCTTTCAAGATATACAGAAATGGAAGAATAGTGAAGGAGATTCCAGGCTCTAAACCCCATTCATTAGAGAGTTTAGTGAAGTTGTACAGCAGTTGA 1899 42.86 MCSSINNTLFCIYYQQSASFTLQQRLNLIMEKTAEFSFCGFVRWIFQPRCKWFKKSSVHSLPTNTSENCSVSDDAKAPLEQDRRTHQKPTLDQSRPSISHQKNQSRRPSDAARISLSNGSVLGNLKPIGSANYSPRNRQEMNSSPKLGGNGNMGNIMRRSSCELKPNVLKSMGNEAYKQGRFEEALALYNRAIALDSENPVYYSNKGASLIALHRFIEAIEECKKALKIQPSYQRAHHRLATTYLRIGEPEKAVAHLEQSGPYSDINDMNRACVLQSCLSKCIEARKLQDWDTLLKETKWAISSVSNSAYKIYALQAEALLKFHRYQEAYAIYQKGQTLEPNLLTKLFSVADSALILSIEAQVYTTMGRFEEAVAAAERSTRLDPTNMEANRVAKWAKLVSSARLRGNLLFKESRFPEACTAYSEGLEHDPYNSILLCNRAACRSKLGRYEKAVEDCTAALMTQPCYSKARHRRADCNAKMERWEASIQDYEVLIRERPGNEEVGRALFEAQLQLRKQHGEDIKDLKFGCNLVCISSYERFRHFVTSPGMSVVLFCNKSYQKEGLEVFESVYERFPWLNFLKVEVEDHPYLVKLEEVRSIPAFKIYRNGRIVKEIPGSKPHSLESLVKLYSS 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3109436 3112353 + Cp4.1LG02g03530.1 Cpe02g00525 464474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00525 632 Pfam Tetratricopeptide repeat 437 461 IPR019734 GO:0005515
Cpe02g00525 632 Pfam Tetratricopeptide repeat 236 260 IPR019734 GO:0005515
Cpe02g00525 632 MobiDBLite consensus disorder prediction 91 111 - -
Cpe02g00525 632 Gene3D Tetratricopeptide repeat domain 167 520 IPR011990 GO:0005515
Cpe02g00525 632 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 118 630 IPR044534 -
Cpe02g00525 632 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 34 109 IPR044534 -
Cpe02g00525 632 MobiDBLite consensus disorder prediction 59 111 - -
Cpe02g00525 632 SMART tpr_5 166 199 IPR019734 GO:0005515
Cpe02g00525 632 SMART tpr_5 354 387 IPR019734 GO:0005515
Cpe02g00525 632 SMART tpr_5 200 233 IPR019734 GO:0005515
Cpe02g00525 632 SMART tpr_5 234 267 IPR019734 GO:0005515
Cpe02g00525 632 SMART tpr_5 434 467 IPR019734 GO:0005515
Cpe02g00525 632 SMART tpr_5 468 501 IPR019734 GO:0005515
Cpe02g00525 632 SMART tpr_5 310 343 IPR019734 GO:0005515
Cpe02g00525 632 SMART tpr_5 400 433 IPR019734 GO:0005515
Cpe02g00525 632 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Cpe02g00525 632 MobiDBLite consensus disorder prediction 127 153 - -
Cpe02g00525 632 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 34 109 - -
Cpe02g00525 632 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 118 630 - -
Cpe02g00525 632 SUPERFAMILY Thioredoxin-like 476 624 IPR036249 -
Cpe02g00525 632 MobiDBLite consensus disorder prediction 76 90 - -
Cpe02g00525 632 Gene3D Glutaredoxin 530 631 - -
Cpe02g00525 632 ProSiteProfiles TPR repeat profile. 166 199 IPR019734 GO:0005515
Cpe02g00525 632 Pfam Tetratricopeptide repeat 361 434 - -
Cpe02g00525 632 Pfam TPR repeat 173 209 - -
Cpe02g00525 632 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
Cpe02g00525 632 SUPERFAMILY TPR-like 167 390 IPR011990 GO:0005515
Cpe02g00525 632 SUPERFAMILY TPR-like 403 518 IPR011990 GO:0005515
Cpe02g00525 632 CDD TRX_family 539 628 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00525 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 892.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00525 Cpe06g00508 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00525 Cpe-Chr2:3109436 Cpe02g00673 Cpe-Chr2:4227564 2.77E-125 dispersed
Cpe02g00525 Cpe-Chr2:3109436 Cpe06g00508 Cpe-Chr6:3027491 0 wgd
Cpe02g00525 Cpe-Chr2:3109436 Cpe06g00649 Cpe-Chr6:4037845 1.08E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00525 Cpe_Chr02 FPKM 32.500931 36.924843 1.109993 1.193882 5.731373 3.862999 7.03247 10.243806 11.211705 10.057685