Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00541 ATTAGAGCTTCGCAGTTCAGACCTAAGAAAATGGATGAGTCTTCGCTGCAACTTATCCACGACGTCGGAACTAAATTCAGCAAACAGTCTCGTCCAACCAAGGATTACATCGTGAAATCCCTCCGGTTTCTGAATTTCTCTTCTCGTTATGATCGCACTGTCCAAGTTGTAGATGCTTTTGCTTGTTTGGAACAGTCTTACGTCCCAGATGCTACAAGGGAGTCAGAATCAGCTAAAAAATTAGAGAGTTCTATAAAGCCTCTAATGAAATCTATAGTTAATGGTCTTCTACGGAATAGAGATAAAGATGTGAGACTTCTATTAGCTATATGCGTTAGTGAAATGTTCCGGGTCACGGCTCCAGAACCACCTTTCGAAGACAAATATCTAAGGGATGTTTTTATACTTCTTTTGAGCTCTTTTTCGGAGCTAGGTGATACAACAAGTCCACTTTTCCCTCGGAGGGTTAAAATACTAGAGACAGTGGCACGATGTAAATGCTGTGTGATAATGCTTGACATTGGATGCAACGACTTGGTGTTGGAGATGTTTGATACATTTTTCTCTGCTTTAAGAGACTATCACGAACCTAGTCTGGTTAACAACATTTTGTCAATAATGACCCATATTCTAAGCGAGGATGCCTCTCTACCGCTAGTAGATGTGGTTTTGCACAATGTTGTGAAGGAGGAAAAGGGTGAACCTACAGCTGCTTCTCGCCTTGCAGTTTCCGTCATTGAAGCCAGTGCTGAGACGCTTGAACCATTTGTTTGTGGATTCTTAACATCTTGTATTTCAGAGAGAGATGTGGCGGGAAATGAACTCAAAGAATTTTACCATGAACTAATTTTTAGAATTTTCCAAAGTGTCCCTCAGATGCTTCTTCCTGTGATTCCAAACTTGACTCTAGAGCTTTTGACGGACCAAGTTGATGTTAGAATAAAAGCGGTTAAAATCGTTGGTAGGCTTTTAGCTCTACCAAAACACTCTGTAGCACAAAAGTACCGAGGACTTTTTATGGAGTTCTTGAAAAGGTTTAGTGACAAATCTGCAGAAGTTAGAATTCATGCTATCCAATGTGCTAAAGATTGTTATCTGGCCAATCCTGGTAGTTCAGAATCTCTTGAAGTTCTGGCTGCAGTCGAAGAACGGTTACTAGACTTCGATGATAGAGTGAGAACCCGAGCAATAATTATTGTTTGTGATATTGCCCGATCAAATATCAAATTTGTCCCCGTGACACTAATATCTCAAGCTGCTGAAAGACTACGAGATAAGAGGATATCAGTTAGGAAAAAAGCCCTTCAGCAATTGTTGGAAGTGTATCGAGACTATTGTGATAAATGTTCCAAAGGTCAATTGACTATGAACGATGACTTTGAACAGATTCCTTGTAAAGTCTTGATGCTTTGCTATGATAAAGATTGTAAGGAGTTCAGGTTCCAGTGCATGGAACTTGTTCTCGTGGAAGATTTATTTCCAGCTCATCTCTCTCTTGAGGAAAGGACAAGCCACTGGATCCATATGTTCTCTCTTTTCAATATCCATCATGAAAAGGCCCTTAGATATATTTTGCTGCAAAAACAGAGGTTACAAGATGAGTTGCAAACTTATTTGAGTCTACGAAAAAAGGGAAAGGAGAACCAATCAGAAGAGGTAGAAAAGCGAATTGAAACTGCATTTCTCAAAATGGCAGCCTGCTTTCCAGATCCTACAAAAGCAAAGGAGTCCTTTCATAAATTAAATCAAATTAAAGCTGATAATATTTTCATCCCGTTGGAGCTTTTACTTGATGAATTGACAAGTGTGGAAGCTGAGGCCACCAGAGACAAATTGTTGAGGATGATAGGAAGTAAACATCCTCATTTTGAGATTTTGAAATCACTCTCCTCAAAGTGTTCGTATAATTTATTCAGCACTGAGCATGTACGCTTTGTATTAGACTGCATTCTGAGTAACAGACTTGCAAATAAACATTTGGAGGCTTCTGCTGGCAAGCTTCTACTGGCTATTTTCGGCATTTTCCCCGCACTCATCAGAGGCTTGGAAGGCCAACTGCTAAGGTTGTTGGAAGAAAGCAACCCAATAGATAGTAAGCTGATCGAAGTATTGGCAAAAGCAGGCCCTCACTTATCAATTGAACTCAGTGATGTATACCCATTTCTGGAGAGATTATGCTTGGAGGGTACTCGTGCTCAATCAAAGAGTGCTGTTTCTGCCATTGCAGCTTTAGCTGAATATTCTGTTTCAACCTTTGATGATCATGATCTAGGGATCACACCTTATATATATGAAAAAATCCTCCAAGTGGACCTATCAGATAATTTCAATACATTAGACGGGGATAGCAATTCTTGCGATTTAAAGATTTATGGGCTGAAAACAATCGTTAAGAGTTTTTTGCCACATCAAGGAACTCCTAGAAGAAATGTTGACGAGTTTCTGAAAATTTTATTAGGGATGCTGAACGCGTGTGAAGCTTCTGTTGGGAACATCCCTACTGATAGTGATCAAGCTCGAATCAGATTAGCTGCTGCAAAATCGGTTCTTCGTCTTGCCAGAAGATGGGATTCACAAATTACACCGGAGATTTTCTGTTTTGCAATCTTGATGGCAAAGGACTCCTCTTCTTTGGTTAGAAGGCTATTTATTGACAAAGCACACAAGTTACTAAAGGAGAAGGCTATACCTACTCGATATGCTTGTGTTTTTGCATTTTGCATCTCAGATAGCTTGAAGGATCTCCAGGATGATTCACTCAAATATATGGCAGAATTTATTGAGCAATATAGGAAGATAGCTCAGATTCATCAAAATTCTGTGGGTCAAGATGGATCACTGACCTTTGTTCCAGCGTATATACTCATGATTCAGGCTTCCCACATACAGACTGTCAAGATGAAAATGAATATGCTCAATTTTGTAGATGTAAATGTTGCAAAGGATACCGTTTTGTATTTGCACAGTATTTTTCGTGCCATTAAGAGGGTTGAGGATGCTGTGGATATTGAAACATCACCTAAGTTACACATTTTAGCGGACATTGGTCTCTCTTTTGTAACTGCTCTAAATTATTCCGGAGTCTCCCTATCACGTGCCCCAAGGCAGATTTTGCTGCCATTATCACTATATAGAGTAAATTCCAGGCAGCTTTCTCAACATGCTTTGGATGAATGTTTTATTGGAAGAGTTATTAAGACATTTCAATCTCAGTTCATTTTGCCCACTATCAACCCATGTTCCTCAATAAGCATGAAAGCTTGTAAGCAAGTTGAAGCCATTTCCTCTAGAGTAACGAAGATCAATAAAGCTGTGAATCAGGAGGCTATTGTTGGACGGAGGCGAAAACGGGCTGTCTCTCCAACAATGTCCTCATCAATTGAGTTTCGGGAGAGTTCTCTACTTATTCAACAAAATTTCCCAACAAACAGAGAAAAAAGTGCATTTTCTTCTCAATGTGAAACTACAGAAGCTTCTCTTGTTGAAGCATATGCGTCAATTCAGAGTCAGGACAATGTCGCAAATATTAGTGGGAAAGTCCAACTGCTGAGCTCGGAAACTAAGAGTGAGGATACTACACCAGATGGTTTCCTGGTAGAAAAGGTTGTTGGAAGTATCAAATACGAGCATTTGCTGTCTTGA 3642 39.73 IRASQFRPKKMDESSLQLIHDVGTKFSKQSRPTKDYIVKSLRFLNFSSRYDRTVQVVDAFACLEQSYVPDATRESESAKKLESSIKPLMKSIVNGLLRNRDKDVRLLLAICVSEMFRVTAPEPPFEDKYLRDVFILLLSSFSELGDTTSPLFPRRVKILETVARCKCCVIMLDIGCNDLVLEMFDTFFSALRDYHEPSLVNNILSIMTHILSEDASLPLVDVVLHNVVKEEKGEPTAASRLAVSVIEASAETLEPFVCGFLTSCISERDVAGNELKEFYHELIFRIFQSVPQMLLPVIPNLTLELLTDQVDVRIKAVKIVGRLLALPKHSVAQKYRGLFMEFLKRFSDKSAEVRIHAIQCAKDCYLANPGSSESLEVLAAVEERLLDFDDRVRTRAIIIVCDIARSNIKFVPVTLISQAAERLRDKRISVRKKALQQLLEVYRDYCDKCSKGQLTMNDDFEQIPCKVLMLCYDKDCKEFRFQCMELVLVEDLFPAHLSLEERTSHWIHMFSLFNIHHEKALRYILLQKQRLQDELQTYLSLRKKGKENQSEEVEKRIETAFLKMAACFPDPTKAKESFHKLNQIKADNIFIPLELLLDELTSVEAEATRDKLLRMIGSKHPHFEILKSLSSKCSYNLFSTEHVRFVLDCILSNRLANKHLEASAGKLLLAIFGIFPALIRGLEGQLLRLLEESNPIDSKLIEVLAKAGPHLSIELSDVYPFLERLCLEGTRAQSKSAVSAIAALAEYSVSTFDDHDLGITPYIYEKILQVDLSDNFNTLDGDSNSCDLKIYGLKTIVKSFLPHQGTPRRNVDEFLKILLGMLNACEASVGNIPTDSDQARIRLAAAKSVLRLARRWDSQITPEIFCFAILMAKDSSSLVRRLFIDKAHKLLKEKAIPTRYACVFAFCISDSLKDLQDDSLKYMAEFIEQYRKIAQIHQNSVGQDGSLTFVPAYILMIQASHIQTVKMKMNMLNFVDVNVAKDTVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSRAPRQILLPLSLYRVNSRQLSQHALDECFIGRVIKTFQSQFILPTINPCSSISMKACKQVEAISSRVTKINKAVNQEAIVGRRRKRAVSPTMSSSIEFRESSLLIQQNFPTNREKSAFSSQCETTEASLVEAYASIQSQDNVANISGKVQLLSSETKSEDTTPDGFLVEKVVGSIKYEHLLS 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3212934 3227032 + Cp4.1LG02g03410.1 Cpe02g00541 464490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00541 1213 Pfam Sister chromatid cohesion protein PDS5 protein 80 744 - -
Cpe02g00541 1213 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 13 1123 IPR039776 GO:0007064
Cpe02g00541 1213 SUPERFAMILY ARM repeat 253 938 IPR016024 -
Cpe02g00541 1213 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 13 1123 - -
Cpe02g00541 1213 SUPERFAMILY ARM repeat 15 304 IPR016024 -
Cpe02g00541 1213 Gene3D - 75 516 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00541 K11267 PDS5; sister chromatid cohesion protein PDS5 - csv:101216961 1642.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00541 Cpe-Chr2:3212934 Cpe09g00640 Cpe-Chr9:4819111 6.83E-175 dispersed
Cpe02g00541 Cpe-Chr2:3212934 Cpe06g00625 Cpe-Chr6:3864881 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g272 . . . Bda03g00009 . . Bma04g00007 . . . Cma01g01401 . . . . . . . . . . . . . . . . . . . . Cone4ag1405 . . . . . . . . . . . . . . . . Cmo01g01451 . . . . . . Cpe02g00541 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006492 1 5 1 1 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00541 Cpe_Chr02 FPKM 3.21134 3.862683 18.36832 18.68948 43.171608 40.718227 42.33186 17.997576 17.953682 17.53606