Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00544 ATGGCGTCTACTTTTAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTTGGGGCCGCTGCTGCTCTTGTTTTCTCCTGCATGGGTGCTGCTTATGGGACTGCAAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGAGGCCTGAGCTCGTCATGAAATCTATTGTTCCTGTTGTCATGGCAGGAGTGTTGGGTATTTATGGGTTGATCATCGCTGTTATTATTAGTACTGGAATAAACCCAAAAGCAAAGTCATACTATTTGTTTGATGGGTATGCTCATCTTTCTTCTGGACTTGCTTGTGGTCTTGCTGGTCTCTCTGCAGGAATGGCAATTGGGATTGTTGGCGATGCCGGTGTTCGGGCCAATGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCTCTTGCCCTCTACGGTCTTATTGTTGGTATCATTCTCTCTTCTCGGGCGGGTCAATCTCGTGCGGATTGA 498 47.99 MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3249150 3252214 + Cp4.1LG02g03250.1 Cpe02g00544 464493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00544 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cpe02g00544 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cpe02g00544 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cpe02g00544 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe02g00544 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe02g00544 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe02g00544 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe02g00544 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cpe02g00544 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cpe02g00544 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cpe02g00544 165 Gene3D - 11 162 IPR035921 -
Cpe02g00544 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cpe02g00544 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe02g00544 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00544 Cpe-Chr2:3249150 Cpe07g00379 Cpe-Chr7:2450787 9.23E-113 dispersed
Cpe02g00544 Cpe-Chr2:3249150 Cpe06g00629 Cpe-Chr6:3901365 2.27E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00544 K02155 - csin:114302022 288.885