Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00550 ATGGTGAAGAAATCGGAGAAGACGGCGGCGGAATCGTTTCCTGTGGCGGCGCCGTCGTGTAAAAAGAAGTATAAGGGTGTTAGAATGAGGAGTTGGGGGTCGTGGGTATCGGAGATTCGAGCGCCGAATCAAAAGACGAGGATTTGGTTAGGGTCTTATTCGACGGCGGAAGCTGCGGCGCGTGCTTACGACGCGGCGCTTTTATGTCTCAAAGGTGCTTCTGCTAGCCTTAACTTCCCGGAAATTGCTAACTCTATTCCGATTTCCGATCACTGCCACTTCCGCCGCTTACACCACCATATTGATTCCTCCGATGCCGACATTATGTCTCCTAAGTCCATCCAGCGTGTCGCTGCCGCTGCCGCTAATGGCTTCCGGGAAAATGTCTCCTCCGCCGTTGTCACTTCCCCACCATCCCCCGCCGTCTCGTCCCCGTCTCACTCCTCCGATCTTCCGGACGATGAAGCGTCGGTCACTGTGTCGTCCGATGGTGTCTACGATCAAATCGATCCGTCGACGGCGGAGATGGATTCATGGTGCAATTACTTTGATACCCTTCAGTCGCCGAAATTCATTGACCAAATGCTCACCGAAGCTTGGTTCGATTTCGGTTCGATTCCGGCGGCCGAAATTCCCGATTTTTACGAGGAAGAAACCGACATCAGATTGTGGAGCTTCTGCTGA 684 53.36 MVKKSEKTAAESFPVAAPSCKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGASASLNFPEIANSIPISDHCHFRRLHHHIDSSDADIMSPKSIQRVAAAAANGFRENVSSAVVTSPPSPAVSSPSHSSDLPDDEASVTVSSDGVYDQIDPSTAEMDSWCNYFDTLQSPKFIDQMLTEAWFDFGSIPAAEIPDFYEEETDIRLWSFC 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3292572 3293255 + Cp4.1LG02g03240.1 Cpe02g00550 464499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00550 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 14 227 - -
Cpe02g00550 227 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Cpe02g00550 227 MobiDBLite consensus disorder prediction 132 158 - -
Cpe02g00550 227 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Cpe02g00550 227 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Cpe02g00550 227 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Cpe02g00550 227 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Cpe02g00550 227 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Cpe02g00550 227 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Cpe02g00550 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 227 - -
Cpe02g00550 227 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02041 Cpe-Chr1:17336578 Cpe02g00550 Cpe-Chr2:3292572 3.35E-44 dispersed
Cpe02g00550 Cpe-Chr2:3292572 Cpe13g00608 Cpe-Chr13:5907136 2.02E-26 dispersed
Cpe02g00550 Cpe-Chr2:3292572 Cpe06g00637 Cpe-Chr6:3950142 4.31E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49012 PF00847 AP2 6.20E-12 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00550 - - csv:101215527 294.278