Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00560 ATGCTGAATCTATCCGACGCAATGGGTAATGTAGCCAGTTCATTGGCCTCTGGTTTGTTTTTGGCTCTTAACAAAGTATTTGGATCTCCACTTGATTTTCTCTCTGGAAAATCCTGCAGTTCAGTGTGTGGATCAACATGGGATTTCATATGCTACATAGAAAATTTCTGCGTTGCCAATTTGCTAAAGATGGGCATGGTCGTGATCCTTGCTTACTTTGTTCTTTTACTCCTCTATTTATTCCATAAAATTGGCATATTTGGATGCATCGGTCGGGGTCTCTGCAGAATGATATGGACATGTTTAGCTTCCTACTGCCATGCATGGGAGTACTGCTGCACTTTCATGTGTATCAAGCTTGCCAGTGTCAAAAGAACAAGACGACGCCATAGAAGAAGAGACCTAGAAGAAGAACTCGAAAGTGAAGAAGAAGCAAAACATCGATATGGGTCATCAAGTGATTCGAGCAACAACTCCGAAAAGATCGAGTCGAGAAGGAGAAAACGGGTGTCTCGCAAACAAAGGAGGAGCCACAGAGGTTCTCAAACGAGTAAGACATTGAGGCCAACGTTCCATGGAATTCGAGTGAGAAGCGGTAGAGTGTTGGTCTATAGTAAGCATGGATCATCCAAGTTCGTGCAGAAAGAAAGGAAGTATAGAAGAGGAAGACAAATACGAGGGTAA 684 42.98 MLNLSDAMGNVASSLASGLFLALNKVFGSPLDFLSGKSCSSVCGSTWDFICYIENFCVANLLKMGMVVILAYFVLLLLYLFHKIGIFGCIGRGLCRMIWTCLASYCHAWEYCCTFMCIKLASVKRTRRRHRRRDLEEELESEEEAKHRYGSSSDSSNNSEKIESRRRKRVSRKQRRSHRGSQTSKTLRPTFHGIRVRSGRVLVYSKHGSSKFVQKERKYRRGRQIRG 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3352040 3354727 - Cp4.1LG02g03020.1 Cpe02g00560 464509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00560 227 Coils Coil 125 152 - -
Cpe02g00560 227 PANTHER TRANSMEMBRANE PROTEIN-RELATED 8 218 - -
Cpe02g00560 227 MobiDBLite consensus disorder prediction 166 182 - -
Cpe02g00560 227 PANTHER F8K7.16 8 218 - -
Cpe02g00560 227 MobiDBLite consensus disorder prediction 208 227 - -
Cpe02g00560 227 MobiDBLite consensus disorder prediction 213 227 - -
Cpe02g00560 227 MobiDBLite consensus disorder prediction 143 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00560 - - - csv:101218855 275.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00560 Cpe-Chr2:3352040 Cpe06g00613 Cpe-Chr6:3785889 1.28E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g240 . . . . . . . . . . Cma01g01379 . . . . . . . . . . . . . . . . . . . . Cone4ag1420 . . . . Csa04g01783 . . . . . . . . . . Sed07g1926 Cmo01g01429 . . . . . . Cpe02g00560 Bhi09g02701 Tan01g4050 Cmetu07g1433 . Hepe01g1596 . . Cla11g01547 Cam11g1611 Cec11g1640 Cco11g1641 Clacu11g1769 Cmu11g1586 Cre11g2003 . . Chy07g00622 Cme07g00827
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009378 0 2 0 1 1 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 0 1 1 0 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00560 Cpe_Chr02 FPKM 17.974134 19.819464 1.557906 1.942737 7.530276 6.105601 7.409909 0.497289 0.801862 0.528016