Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00561 ATGCCAGCATCTCCTTCCTTCCCATCTGGATCTCGCGGAAAATGGAAGAAGAAGAAGAGGGACACGCAAATTGGCCGTAGAAACAACTATGGGAATAATAATAACAACGGAAGCAACAAGCATGATGATGATGATGAAGATGAAGATCTTGCCACTGTTGAAAATGAGGAAATGGAACGCGATAACGACGATTCGGAGGACCCTCAGCCGACGCCCAATTCGAGTCTTCAGGAGACTGAGCTCTTGTCGGATGATAAAATGCGAGTCTCCGAGTTTCCTCAGGTGGTCAAGCGGGCTGTCACTCGGCCTCACTCTTCTGTGTTGGCTGTTGTGGCAATGGAGAGGGAAAGTCAAAGTAAGGTGCTGTCTGGGAATCCCTTGATTTTGGAGAATGTGTCTTACGGGCAGCTGCAGGCGCTGTCTGCTATGCCTGCGGATAGTCCGGCTTTGCTGGATCAAGAGAGGGTGGAGGCTGGGAATGCGGCGTATGTGATAACTCCACCATCGATTATGGAAGGTTGTGGCGTGGTCAAGAGGTTTGGGAGTAGAGTTCATGTTGTTCCTATGCACTCAGATTTCTATTATGTAACAGTTGATTTGTTGGAAACAGATTGGTTTTCACCTGCCACAGTGCATCGACTCGAGAGACAAGTTGTTCCACATTTCTTCTCTGGGAAATTGCCTGACCGCACTCCTGAGAAGTATATGGAAATCCGAAACTTTGTTGTTGCCAAATACATGGAGAATCCTGAGAAAAGGGTCACAGTTTCAGACTGCCAAGGATTGGTTAATGGTGTCAGTAATGACGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAACTATTGTGCCCCAACACCTAGTTGTGAACCATGGAATAGAAGTTCATACTTGAGAGAAGATATGAACGGTGAGATTCATGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTAATCAAATTTGACAAACCAAAATGTAGGCTCAAGGCAGCCGATATCTATTCGGCACGTTCATGCCATGATGACAATGATGATTTATGTGATTTGGATAACAGAATTCGGGAGCGTCTAGCTGAAAGTCATTGTAGCTCGTGTTCTCGAACAGTTCCCATTGTATGCTACCAATCACAGAAGGAGGTAGATGTTTTACTTTGCACCGACTGCTTCCATGAAGGAAAATATGTTGCTGGTCACTCGAGCATCGATTTTCTGAGGGTGGACATGACGAAAGATTATGGTGAACTAGATAGCGAAAATTGGACCGATCAAGAAACTCTGTTGCTTTTAGAAGCGATAGAATTGTATAATGAGAATTGGAATGAAATAACAGAACATGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTCCGTCTATCAGTTGAAGATGGTATTCTAGAAAATGTTGATGTGCCTGGTGTTCCTCTCTCATCCAATTCTTCACATGGAAAAGATAACGAGAAGTCACATTCAAATATGAATGGAAATGTAGCAGGATCTTCCTCTCAAGACAATAAAGAGATGCATGATAGACTCCCATTTGCTAATTCTGGGAACCCAGTCATGGCGTTGGTTGCTTTTCTTGCATCTGCTATTGGACCAAGAGTTGCTGCATCATGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGCAGCTTCTTCTGGGAGCATATTTCAAGTGGAAGGTTCTGTGAATCCTAGTAGGACGAATGTGGAGGTCACACATGGCAGAGACGGTGGCTCCTATGGAAAGCTTCCAAATTCAGTCAAGCTAAAAGATGAGAATAAGGCAGAGACAGAGGTAACACTATTATCTGCTGAAAGAGTTAAAGTTGCAGCAAAAGTAGGTCTTGCTGCCGCTGCAACAAAGGCTAAATTGTTCGCAGACCACGAAGAACGAGAAATCCAACGGCTGTCTGCTAATATTATAAATCATCAGTTAAAAAGACTTGAGTTGAAGCTGAAGCAGTTTGCAGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTCGAGAGGACAGGGCAGAGATTTGTTGCAGAACGAGCTCGAATGTTAGGTGTCCAATTTGGAGCTGCTGGAGTCAGCTCACCTGCGAGTTTACCGGGGGTTATTCCTCCCGTGGTAAACAACAATAGGGTGAGCTCACCTGCGAGTAGGCCGAATGTGATCTCGCCTCCACCATCCCAGCCGAGTGTTTCGGGGTATGGCAACAACCAACCACTTCATCCCCACATGTCGTATGTGCCCAGGCAGTCGATGTTTGGCTTGGGGCAAAGGCTACCTTTGTCAGCAATTCAGCAGCAGCAGCAGCAGCTGGCCTCGACGACTTCATCTAATGCTATGTTCAATGGCCCAAGCAATGCACAGGCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGCTGA 2457 45.3 MPASPSFPSGSRGKWKKKKRDTQIGRRNNYGNNNNNGSNKHDDDDEDEDLATVENEEMERDNDDSEDPQPTPNSSLQETELLSDDKMRVSEFPQVVKRAVTRPHSSVLAVVAMERESQSKVLSGNPLILENVSYGQLQALSAMPADSPALLDQERVEAGNAAYVITPPSIMEGCGVVKRFGSRVHVVPMHSDFYYVTVDLLETDWFSPATVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDCQGLVNGVSNDDLTRIVRFLDHWGIINYCAPTPSCEPWNRSSYLREDMNGEIHVPSAALKPIDSLIKFDKPKCRLKAADIYSARSCHDDNDDLCDLDNRIRERLAESHCSSCSRTVPIVCYQSQKEVDVLLCTDCFHEGKYVAGHSSIDFLRVDMTKDYGELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGILENVDVPGVPLSSNSSHGKDNEKSHSNMNGNVAGSSSQDNKEMHDRLPFANSGNPVMALVAFLASAIGPRVAASCAHASLAALSEDSAASSGSIFQVEGSVNPSRTNVEVTHGRDGGSYGKLPNSVKLKDENKAETEVTLLSAERVKVAAKVGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTGQRFVAERARMLGVQFGAAGVSSPASLPGVIPPVVNNNRVSSPASRPNVISPPPSQPSVSGYGNNQPLHPHMSYVPRQSMFGLGQRLPLSAIQQQQQQLASTTSSNAMFNGPSNAQASLSHPMMRPVTGSSSGLG 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3355557 3363381 + Cp4.1LG02g03080.1 Cpe02g00561 464510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00561 818 PANTHER SWI/SNF COMPLEX-RELATED 69 817 - -
Cpe02g00561 818 MobiDBLite consensus disorder prediction 42 64 - -
Cpe02g00561 818 Pfam SWIRM domain 203 286 IPR007526 GO:0005515
Cpe02g00561 818 MobiDBLite consensus disorder prediction 721 757 - -
Cpe02g00561 818 CDD SANT 424 466 IPR001005 -
Cpe02g00561 818 Coils Coil 637 657 - -
Cpe02g00561 818 Gene3D - 421 471 - -
Cpe02g00561 818 Pfam Myb-like DNA-binding domain 423 465 IPR001005 -
Cpe02g00561 818 ProSiteProfiles Myb-like domain profile. 417 467 IPR001005 -
Cpe02g00561 818 SUPERFAMILY Homeodomain-like 201 294 IPR009057 -
Cpe02g00561 818 MobiDBLite consensus disorder prediction 1 87 - -
Cpe02g00561 818 MobiDBLite consensus disorder prediction 483 520 - -
Cpe02g00561 818 MobiDBLite consensus disorder prediction 776 818 - -
Cpe02g00561 818 SMART sant 421 469 IPR001005 -
Cpe02g00561 818 Pfam SWIRM-associated region 1 624 694 IPR032451 -
Cpe02g00561 818 SUPERFAMILY Homeodomain-like 422 472 IPR009057 -
Cpe02g00561 818 Gene3D - 203 290 IPR036388 -
Cpe02g00561 818 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 69 817 - -
Cpe02g00561 818 ProSiteProfiles SWIRM domain profile. 197 295 IPR007526 GO:0005515
Cpe02g00561 818 ProSiteProfiles SANT domain profile. 420 471 IPR017884 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00561 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 1315.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00561 Cpe06g00612 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01225 Cpe-Chr1:7314934 Cpe02g00561 Cpe-Chr2:3355557 1.08E-06 dispersed
Cpe01g02248 Cpe-Chr1:19094037 Cpe02g00561 Cpe-Chr2:3355557 1.37E-06 dispersed
Cpe02g00561 Cpe-Chr2:3355557 Cpe15g00532 Cpe-Chr15:6214774 1.25E-12 dispersed
Cpe02g00561 Cpe-Chr2:3355557 Cpe06g00612 Cpe-Chr6:3776713 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00561 Cpe_Chr02 FPKM 0.17987 0.522549 1.702904 1.558782 31.252102 35.452339 28.318014 0.0 0.0 0.0