Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g00567 | ATGCCTCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTCGTTCGGGTCCTGACCAACACTCTCGAGACTGCCAGTTGTCCTCATATGCTCTTTTATGGACCGCCGGGTACCGGAAAAACCACCACCGCCCTCGCGATTGCTCATGAACTATTCGGTCCTGAACTTTACAAGTCCAGAGTTTTGGAATTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCTGTAAGCAGTGGCCAACGCCAGGGGGGTTATCCTTGCCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACACGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAAAGGTTATGAGCAAGCGTATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCTAAGGATCTGATTAGCGTGTCTGGGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGGAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTCTCACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAA | 975 | 44.62 | MPRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEKVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 3386282 | 3390730 | + | Cp4.1LG02g03130.1 | Cpe02g00567 | 464516 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g00567 | 324 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 3 | 317 | - | - | |
| Cpe02g00567 | 324 | PANTHER | REPLICATION FACTOR C SUBUNIT 4 | 3 | 317 | - | - | |
| Cpe02g00567 | 324 | Pfam | Replication factor C C-terminal domain | 228 | 313 | IPR013748 | - | |
| Cpe02g00567 | 324 | SMART | AAA_5 | 28 | 161 | IPR003593 | - | |
| Cpe02g00567 | 324 | Pfam | ATPase family associated with various cellular activities (AAA) | 32 | 159 | IPR003959 | GO:0005524|GO:0016887 | |
| Cpe02g00567 | 324 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 227 | 313 | IPR008921 | GO:0003677|GO:0006260 | |
| Cpe02g00567 | 324 | Gene3D | - | 227 | 317 | - | - | |
| Cpe02g00567 | 324 | Gene3D | - | 2 | 160 | IPR027417 | - | |
| Cpe02g00567 | 324 | Gene3D | - | 162 | 226 | - | - | |
| Cpe02g00567 | 324 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 20 | 208 | IPR027417 | - | |
| Cpe02g00567 | 324 | CDD | AAA | 13 | 153 | - | - | |
| Cpe02g00567 | 324 | CDD | HLD_clamp_RFC | 161 | 220 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00567 | Cpe-Chr2:3386282 | Cpe14g00835 | Cpe-Chr14:6781291 | 1.41E-58 | dispersed | |
| Cpe19g00815 | Cpe-Chr19:6100226 | Cpe02g00567 | Cpe-Chr2:3386282 | 2.19E-09 | dispersed | |
| Cpe02g00567 | Cpe-Chr2:3386282 | Cpe01g02062 | Cpe-Chr1:17463372 | 3.59E-55 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g00567 | K10755 | - | csv:101221224 | 591.652 |