Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00570 AATTTACGCGGAAACCCTTCCCGCCATTTACACAGTCCGCTTTCTCTTCGTTTCATTTCCAAAGACACTCCAAATTCCGTTCCTCTCTCTCTCGTCCATGTTCGATCGAGGGAGAAAGTTGACGAAGCAACGGCGGAGATGCTGAATTCGAAGCCCTTCGCCGGAGGCAGCGTGTTCGTGTCCTGCAATCTTGTTTCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAACGGGGGAAAAGTTCGAGGATCTTTGCGCGAAGAATTGAATTTCTGCTATTGGGAGGGTCCTCAGTGCGTGCTTTCATGTGCAGAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTACCTTGCTATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGCGGATGAAAAGCTACGTTTAGTTAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATACAAAAGCATCTCTAGATTCACCTTCATCGTCGTGAAGAATGTCTTGGCTGCAAAATATAAGACAGCTGAAATTGTTGAATGGATAAATCAAAAGGGGGAGGGGAGATTGTTGAGGACCACAAGAGAAACGACATCAAAATCTTCTGTAGTAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTGTTGGAGCAGACAAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGAGATGGGAGCGCAGGCATATATTATGGTTTTAGTGAAACACAAACCGAGTCTCAGAATCATCATTGAAGTTGAAATTGATACTAGGAACAAACATACTTGGCTATTAGTTCCAGCCTGTGAACAGTTCAATGTTGTGGGTTATGAAGAGGATTTGTCGGGAATGCAAATACTTATAGACAGAGTTCGAACCTGGAGTAGCATGACT 945 43.92 NLRGNPSRHLHSPLSLRFISKDTPNSVPLSLVHVRSREKVDEATAEMLNSKPFAGGSVFVSCNLVSQEIFDALKQNGADVFICCDPSRNGGKVRGSLREELNFCYWEGPQCVLSCAEEYRPLPQQDFTCYLAMDGVKILASGFQADEKLRLVREVSYCNGRSIAYKSISRFTFIVVKNVLAAKYKTAEIVEWINQKGEGRLLRTTRETTSKSSVVTLHVPDVAAAIENLLEQTRAERKEDVRILILEMGAQAYIMVLVKHKPSLRIIIEVEIDTRNKHTWLLVPACEQFNVVGYEEDLSGMQILIDRVRTWSSMT 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3396467 3399572 - Cp4.1LG02g03050.1 Cpe02g00570 464519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00570 315 SUPERFAMILY BRCT domain 106 187 IPR036420 -
Cpe02g00570 315 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 57 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00570 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 - csv:116405487 162.155
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00570 Cpe06g00607 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00570 Cpe-Chr2:3396467 Cpe06g00607 Cpe-Chr6:3737758 1.00E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00570 Cpe_Chr02 FPKM 13.729097 14.787423 21.912712 18.793938 18.530544 18.398401 18.368031 10.426311 11.843122 13.355746