Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00571 ATGCATGAGTATTGCAGCCCTTCTATGCAGTTGGTTGATATCTTGGATAAGTATCATAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATCTGAGCAACGAATTGGACAGAGTCAAGAAGGAAAACGACAACATGCAGATTGAGCTGAGGCATCTGAGAGGGGAAGATATAACGTCTCTCAATTACAAGGAGCTAATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCATTGGTGTTCGTGAAAAGCAGTCGGAGTTCATGAAAATGATGAGGACAAATGAAAGGATGATGGAAGAGGAGAATAAGCGGCTGAACAATGAGCTGTACCAAAAGGAGATGGAAGCCATGGGAGAATGTGTGAGAGAAATGGATAATGGATACAATCAGAGAATGAGGGATTTCAATTCTCAGATGCCTTTTGCCTTCAGAGTGCAGCCTATTCAGCCAAATCTACAAGAAAGGATATAA 477 42.56 MHEYCSPSMQLVDILDKYHKQSGKRLWDAKHENLSNELDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLIGVREKQSEFMKMMRTNERMMEEENKRLNNELYQKEMEAMGECVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERI 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3406131 3410360 + Cp4.1LG02g03120.1 Cpe02g00571 464520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00571 158 ProSiteProfiles K-box domain profile. 31 117 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g00571 158 Coils Coil 90 117 - -
Cpe02g00571 158 Coils Coil 24 58 - -
Cpe02g00571 158 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 157 - -
Cpe02g00571 158 Pfam K-box region 29 111 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g00571 158 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00571 K09264 K09264; MADS-box transcription factor, plant - csv:101222239 272.707
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00571 Cpe06g00605 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00571 Cpe-Chr2:3406131 Cpe02g00096 Cpe-Chr2:486669 2.10E-11 dispersed
Cpe02g00571 Cpe-Chr2:3406131 Cpe06g00605 Cpe-Chr6:3725574 6.90E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g212 Blo01g01307 . Bda01g00675 . Bpe02g00630 Bpe04g00229 . Bma01g02089 . . Cma01g01365 Cma09g00768 . . . Cpe06g00605 . . . . . . . . . . . . . . . . Cone7ag1502 . . . Csa04g01775 . . . . . . . . . . Sed14g1017 Cmo01g01418 Cmo09g00760 . . . Car09g00678 . Cpe02g00571 Bhi09g02715 Tan01g4063 Cmetu11g1957 . Hepe01g1587 Mch11g0856 . Cla11g01559 Cam11g1624 Cec11g1650 Cco11g1650 Clacu11g1780 . Cre11g2015 . . . Cme07g00807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008495 1 1 1 2 1 0 2 1 0 0 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00571 Cpe_Chr02 FPKM 5.127223 5.755595 3.316993 3.647268 10.586925 10.105568 11.068681 0.315597 0.0 0.60166