Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00574 ATGGATGGTGAAGAAGGAGGGATACGGCTAAGCAAGAGGTTCTCCGACAAATCTGGATCCGGTGAAGTTGATTACAAGGCCAAGGCTGGCACCGCTTGGAGCCATTCGTATCTCAACCAGAAGCCCTGGCATCCTCTCTCGTACCCTAATCAACGCCGCAAATGGATCGCCGAGCAGACTCACTCTCAGCGAGAAAAGCGCGCCGACGAAGTTGCTCGCGAGTATGCTCAAGAGCAGGAGTTCTTTCGCCAGACTGCTCTTGTCTCCAAGAAAGAGAAGGAAAAGTTGGAGATGATGAAAGCGGTTAGTTTTATGTACGTACGACCACCTGGTTACAATGCTGAAAGTGCAAAAGCTGCAGAGATTGCTGATGATAGGAAGAATCAAGAGGGTGATAGCTCCTCTCAGAATCTGCCCAAGGATGGCTCTGTGAATGAAAGGCCACCAGAATCGTCAGGCACAGTCGGTAGGGACCATGGCGATAAGAAGAAACCAAGGCCAAAAGATGTTTTCGGGCGTGCTTTGCCCACCGAAGAAGAATTTGAAGTCTTAAAAAATGCCCCTCGGATGGACACAGGTGTTTTTGCGAGAGTAAAACCATTTGGGGTAGAACCTCTGAAGTGGGAGTTGAAGCAGAAACCAGGAATTAGTCCTCCCCGTGGAGGTTTTAATCCCGATGACCCGAACCAGCAAATAGTTGCCGAGGACATATTTGATGAGTACGGAGGCTTTCTCAGCAGTGGCGGTATTGTCCCGGAATTGCTGTCCAATTTTTCAAGCAAACCCAAGAAAAAGAAGTCTTCAAAAGAAAGTTCACGGAAAAAGCTCCAATCATCATCTAGTAGAAAAGCAAAGAATCAAGAAGACGATGAGAGAATATCAAAGAAGAAAAGTAAATCTAAAAGAAAGAAACAAATCAGTAGTGAATCAAGTCCAGAAACCTCAGAGTCCGATAGGCGAAATAGAAGGAACAAGCACAAGACTTCCTATTCTTCTGATGATTTCGACCCGGAAACGCATCTTAGGACTAAAAGGCATAGAAGGAAGCATTTAAATACTTCTGATGTTTCCAACTTTGAGCGGCCTCATATTACTGATCGATATTGCCCCGAACGAAGCCCTTCTGATATTTCAGACTCTAGTAGGCAGGATGAACGGAGGAAAGGCAAGGGTTCTGAATCAGAACACAGATCAGGCAGAAAAAACCAATCATACTCTTCTGAAGAGTCCGAATTCGAGACGCATCGACGAAGTGATAAAAGCAGATCCAAACACTCTTCGTCGAAAGATCATCACCCAGATAGTCATCATTCAAGTAGCAAGATGAGACGTAGGAAGTCTTATTCGTCTGATGATTCAGAAACGAACAGGCGTCGTAGAAGTAAAGGCCAAAAGCACAATTACTCATCAGATGATTCTAGAGATAAGAAGAGAAGACGTTAG 1443 45.18 MDGEEGGIRLSKRFSDKSGSGEVDYKAKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHSQREKRADEVAREYAQEQEFFRQTALVSKKEKEKLEMMKAVSFMYVRPPGYNAESAKAAEIADDRKNQEGDSSSQNLPKDGSVNERPPESSGTVGRDHGDKKKPRPKDVFGRALPTEEEFEVLKNAPRMDTGVFARVKPFGVEPLKWELKQKPGISPPRGGFNPDDPNQQIVAEDIFDEYGGFLSSGGIVPELLSNFSSKPKKKKSSKESSRKKLQSSSSRKAKNQEDDERISKKKSKSKRKKQISSESSPETSESDRRNRRNKHKTSYSSDDFDPETHLRTKRHRRKHLNTSDVSNFERPHITDRYCPERSPSDISDSSRQDERRKGKGSESEHRSGRKNQSYSSEESEFETHRRSDKSRSKHSSSKDHHPDSHHSSSKMRRRKSYSSDDSETNRRRRSKGQKHNYSSDDSRDKKRRR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3422069 3426184 + Cp4.1LG02g03100.1 Cpe02g00574 464523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00574 480 MobiDBLite consensus disorder prediction 117 178 - -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 152 178 - -
Cpe02g00574 480 Pfam N-terminal domain of CBF1 interacting co-repressor CIR 43 78 IPR019339 -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 304 341 - -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 272 296 - -
Cpe02g00574 480 SMART Cir_N_3 42 78 IPR019339 -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 252 480 - -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 210 230 - -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 1 22 - -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 132 150 - -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 444 480 - -
Cpe02g00574 480 MobiDBLite consensus disorder prediction 352 437 - -
Cpe02g00574 480 PANTHER CBF1 INTERACTING COREPRESSOR CIR 9 204 IPR040014 GO:0003714
Cpe02g00574 480 PANTHER CBF1 INTERACTING COREPRESSOR CIR 204 428 IPR040014 GO:0003714
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00574 - - K06066 mcha:111010731 663.299
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g967 . . . . . . Bma07g01213 . . . . . . . . . Cpe02g00574 . . . . . . . . . . . . . . . . . Cone9ag0342 . . . . . . . Bda09g00474 Bpe08g01055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011573 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00574 Cpe_Chr02 FPKM 0.378641 0.0 8.278115 8.243405 0.0 0.0 0.118209 7.524009 11.61869 12.313201