Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00578 ATGGAGCAGTTGAAGACGATCGGCAGAGAGCTTGCTATGGGGTCTCAGGGAGGATTTGGACAGTCGAAGGAGTTTTTGGATCTGATTAAATCGATCGGCGAGGCCAGATCCAAGGCAGAGGAGGAGCGAATTATCATTCACGAAATGGAAACTTTGAAACGCCGTCTCACCGATCCCGACATTCCGAAGCGCAAGATGAAGGAGTACATTATTCGTCTCGTGTATGTTGAGATGCTCGGTCATGATCCTTCATTCGGCTACATCCATGCCGTCAAGATGACTCATGACGACAATCTCCTGCTGAAGCGCACTGGTTATTTGGCCGTCACACTCTTTCTTCACGAGGACCACGACCTCATCATTCTCATTGTTAATACCATCCAGAAAGACCTGAAGTCCGATAATTACCTCGTCGTCTGTGCGGCTCTCAATGCGGTGTGTAGGCTTATTAACGAGGAGACTATACCAGCAGTGTTACCGCAGGTTGTCGAGCTTTTGGGACACTCAAAGGAGGCCGTTAGAAAGAAGGCTATCATGGCTCTTCATCGCTGCCACCAGAAATCGCCCTCTTCCATATCGCATCTCCTCTCCAATTTCCGAAAGAGGCTGTGTGATAACGATCCTGGAGTCATGGGAGCCACTCTTTGCCCTCTCTTTGAGCTCATTACTACGGATGTAAATTCCTATAAAGATTTAGTTGTCAGCTTTGTAAGCATTCTTAAACAGGTAGCTGACCGCAGATTGCCGAAGAGTTATGAATACCATCAGATGCCGGCTCCGTTCATACAGATCAAATTATTGAAAATTCTTGCATTACTGGGTGCTGGCGACAAGCAAGCAAGTGAACACATGTATACAGTTGTTGGGGATATATTTAAGAAGTGTGATCCTTTAAGTAATATAGGTAATGCTGTTCTCTACCAAAGTATATGCTGCGTCTCATCTATTTACCCGAATCCTAAGTTGCTGGAAGCTGCTGCTGATGTAATCTCTAGATTTTTAAAGAGTGATAGCCATAATCTAAAATATATGGGCATTGATGCACTTGGTCGACTTATAAAGCTAAGTCCGGATATTGCCGAACAACATCAGTTAGCTGTGATTGATTGTATGGAGGATCCAGATGATACTTTAAAGAGAAAAACATTTGAACTATTGTATACAATGACCAAGTCCACCAATGTCGAAGTGATTGTCAATCGCATGATTGAATATATGATAAGCATTACGGACCATCATTATAAGACTTATATAGCATCAAGATGTGTTAAACTTGCTGAGGAATTTGCACCTAATAACCATTGGTTCATTCAGACCATTAATAAAGTTTTTGAGCACGCTGGAGATTTGGTGAATATTAAAGTTGCACATGATTTGATGCGGTTGATTGCTGAAGGATTTGGAGACGATGGTGATACAGTAGATAACCAGTTGAGATCATCTGCGGTGGAGTCATATTTGCGCATTATTGGGAACCCCAAGCTTCCATCTGCATTTCTTCAGGTCATCTGTTGGGTTCTGGGGGAGTATGGGACTGCTGATGGAAAGTACTCTGCTTCATATATTGCTGGAAAGCTCTGTGATGTAGCCGAAGCCTATTCAAATGATGAAAGCGTCAAGGCTTATGCGGTGACAGCTCTCATGAAAGTATATGCATTTGAGAAGATGTCCGGGAGAAGAGTGGATGTGCTACCTGAGTGTCAATCTTTGATTGAAGAATTATCAGCATCCCACTCAACAGATTTGCAGCAACGTGCGTATGAATTGCAGGCCACCTTAGGCTTAGATGCTCAAGCTGTTGAGAATATAATGCCAGCTGATGCAAGCTGTGAAGATATCGAGATTGATAAAGATCTATCGTTCCTCAACAATTATGTGCAACAGTCACTAGAAAATGGTGCACAGCCTTACATTCCTGAGAGTCAGCGATCTAGGATGGATGACATCAGTGCCATTAAAAGTCTTGACCAGCGTGAAGTTGTGTCGCACAGCCTTCGGTTTGAGGCCTATGATCTCCCAAGGCCTCCAGTGCCATCAAGCGTCCCTCCTATTTCGCCTGCAATCTCAGCTGAATTGGTTCCTGTACCAGAGCCATATCATCCTAGGGAGACATACCAGTCTACATCAGATCCTTCTGTATCAAATGATGGTTTGACTCGAGTCAAGTTACGACTTGATGGTGTTCAGAAGAAGTGGGGCAGGTCGACGTACTCCTCTTCTGGTTCATCTGTGTCTACTTCCACTCCTCAAAAAGCAGTAAATGGTGTTTCACAAGTAGATAGCACTAGTTCTGTAAGCTCAAAACCCACGACTTATAACTCGAGAACTTCAGAACCTGAGATTTCTCAAGAGAAACAAAAGCTTGCGGCCTCCTTATTTGGAGGTTCATCCAAAACCGAAAAAAGGGCACCTTCTGCTGCCCATAAAGCTACCAAGGCACACCATGGTGCCGATAAGCTTCACGCAGCCAAGAAAGCAGTCACGTCAACAGAAGTTGCTGTGCCTAAGGCAAGCCACCAACCACCTCCTCCCGACCTCCTCGACTTAGGTGAACCGGTTGTCACCAGTAGTACACCATTTGTTGATCCATTTAAGCAGTTGGAAGGGCTTCTTGATGAAAGCCAGGTTTCTTCGACCGTGAATTCTAAACCTGTTGAACCCAATAAATCTCCAGATCTTATGGCATTATATTCTGGGACAGCCATGAGTGGACAAGGAAGCAATTTCTTGGATCTTCTATCCTCCAACAAGGATGATTTGAATCTTTCTTCTGGATTGTCAAAAGTGGCCGCAAAGACGGGTCAGGGAGAAACTATTGTTTCGAATTCGACACAATTTAGCAAGGGACCAGATGCAAAGGCATCTTTGGAAAAGGATGCAGTCGTTAGGCAGATGGGTGTGACCCCTACCAGTCCGAATCCGAACTTGTTTAAAGACTTGCTTGGCTAA 2949 44.39 MEQLKTIGRELAMGSQGGFGQSKEFLDLIKSIGEARSKAEEERIIIHEMETLKRRLTDPDIPKRKMKEYIIRLVYVEMLGHDPSFGYIHAVKMTHDDNLLLKRTGYLAVTLFLHEDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCRLINEETIPAVLPQVVELLGHSKEAVRKKAIMALHRCHQKSPSSISHLLSNFRKRLCDNDPGVMGATLCPLFELITTDVNSYKDLVVSFVSILKQVADRRLPKSYEYHQMPAPFIQIKLLKILALLGAGDKQASEHMYTVVGDIFKKCDPLSNIGNAVLYQSICCVSSIYPNPKLLEAAADVISRFLKSDSHNLKYMGIDALGRLIKLSPDIAEQHQLAVIDCMEDPDDTLKRKTFELLYTMTKSTNVEVIVNRMIEYMISITDHHYKTYIASRCVKLAEEFAPNNHWFIQTINKVFEHAGDLVNIKVAHDLMRLIAEGFGDDGDTVDNQLRSSAVESYLRIIGNPKLPSAFLQVICWVLGEYGTADGKYSASYIAGKLCDVAEAYSNDESVKAYAVTALMKVYAFEKMSGRRVDVLPECQSLIEELSASHSTDLQQRAYELQATLGLDAQAVENIMPADASCEDIEIDKDLSFLNNYVQQSLENGAQPYIPESQRSRMDDISAIKSLDQREVVSHSLRFEAYDLPRPPVPSSVPPISPAISAELVPVPEPYHPRETYQSTSDPSVSNDGLTRVKLRLDGVQKKWGRSTYSSSGSSVSTSTPQKAVNGVSQVDSTSSVSSKPTTYNSRTSEPEISQEKQKLAASLFGGSSKTEKRAPSAAHKATKAHHGADKLHAAKKAVTSTEVAVPKASHQPPPPDLLDLGEPVVTSSTPFVDPFKQLEGLLDESQVSSTVNSKPVEPNKSPDLMALYSGTAMSGQGSNFLDLLSSNKDDLNLSSGLSKVAAKTGQGETIVSNSTQFSKGPDAKASLEKDAVVRQMGVTPTSPNPNLFKDLLG 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3445287 3453000 - Cp4.1LG02g02850.1 Cpe02g00578 464527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00578 982 MobiDBLite consensus disorder prediction 732 779 - -
Cpe02g00578 982 MobiDBLite consensus disorder prediction 731 845 - -
Cpe02g00578 982 PIRSF AP4_epsilon 11 674 IPR017109 GO:0015031|GO:0030124
Cpe02g00578 982 PIRSF AP4_epsilon 756 982 IPR017109 GO:0015031|GO:0030124
Cpe02g00578 982 PIRSF AP4_epsilon 700 842 IPR017109 GO:0015031|GO:0030124
Cpe02g00578 982 MobiDBLite consensus disorder prediction 702 716 - -
Cpe02g00578 982 MobiDBLite consensus disorder prediction 697 718 - -
Cpe02g00578 982 Pfam Adaptin N terminal region 48 592 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cpe02g00578 982 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 13 978 - -
Cpe02g00578 982 Gene3D - 12 606 IPR011989 -
Cpe02g00578 982 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 13 978 - -
Cpe02g00578 982 MobiDBLite consensus disorder prediction 802 825 - -
Cpe02g00578 982 SUPERFAMILY ARM repeat 22 598 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00578 K12400 AP4E1; AP-4 complex subunit epsilon-1 - csv:101215149 1659.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00578 Cpe06g00599 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00578 Cpe-Chr2:3445287 Cpe16g00489 Cpe-Chr16:5956669 9.42E-45 dispersed
Cpe09g01133 Cpe-Chr9:9715537 Cpe02g00578 Cpe-Chr2:3445287 2.36E-22 transposed
Cpe02g00578 Cpe-Chr2:3445287 Cpe06g00599 Cpe-Chr6:3686990 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g954 . . . . . . . . . . . . . . . . Cpe02g00578 . . . . . . . . . . . . . . . . . Cone9ag0348 . . . . Blo03g00913 . . . . . . . . . . . . . . . Cpe06g00599 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008303 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00578 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.414431 0.0 1.094308 0.698888 1.419125