Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00579 ATGGCGACTGAATCTGCCTCCGAAGTTTCTGCTAGTCCCGTGGGATCATACATCGGGAGCACGATAAGTTTGATTACGAAATGTGAGATTCGTTACGAAGGCATTCTCTACCACCTCAACATTCAAGAGTCTACCATCGGCTTGGCGAATGTTAGATCTTATGGGACAGAAGGACGAAAGATCGATGGTCCACAGATCCTTCCGAATGATGAGGTGTATGAGTATATTCTGTTTCGAGGCAGTGACATCAAGGATCTGCAACTCAAGTCCCCCTCATTTGCTGAAATGGACAAGCAGATTCATGATGGCTCTGTGATCCAGTCGAAGCATGCTGGGGTCTCAACCTCACCACTCTATCCTTCAGTTGGATGTGAAACATCGACGGTCTCAAATCAGAGCCAGGATTCTCTGGCTTTTAATAATGGACAGTATCCAAGCAAGTTGTCTTCACATCAATCTGTTGCTGCAGTGATGACATCAACTTCTTCCTTTCCTTCAGTCTGGCAAGAAATTGGAAATAACAAAGCTCAGATTACGGGTAAACCTATATTCCACCCAACATCAATTCTTTCCAGGCAGTCTGTTCTGAAGACTGCACCTTCTATTTCGGGTTCGGGTCCATTGCCTACATTGCCTGCACCTTCATTAACTCCTTATCAATTATCACAGTCTGGGGCAGAAGTACTTTCCTCCACAAAGAAACTGTGTGTTGATGCAAGGAACTTGGGTGCTTCTACACATATTGCTTCTAATTCTTCGATATCAATTGCTGCGGTTGAACATCAAACACCCTCGTTTCCATCTCTGAGAGAGATGCCTGCTCAACAGTTCACAGAAGAATTTGATTTTCAAGCCATGAACGAGAAGTTCAAGAAGGACGAGGAAGAGAGACATTGGGCGATACCTAGAGCTAAGCCTGCATATAACAAGGATGAATTCTTCGATACAATTTCCTGCAATTCTCTTGAACGTGGATCAAGGAATGGACACAGCCGTTTCTCTAGGCCAATGAAATTTGGCTCCGAGTTCACAGAAGAATTTGATTTTCAAGCCATGAACGAGAAGTTCAAGAAGGACGAGGAAGAGAGACATTGGGCGATACCTAGAGCTAAGCCTGCATATAACAAGGATGAATTCTTCGATACAATTTCCTGCAATTCTCTTGAACGTGGATCAAGGAATGGACACAGCCGTTTCTCTAGGCCAATGAAATTTGGCTCCGAGACAAGCGGAGGCCTTCCACATATGGGCGGCAATGTTGGCTATGGCGTTAGACGCGCCATACATGACGCGAAGGAGGCGAGGGTGAGGGTTGCAACAATGGAAAACCCTATCACGAAGAAGCTGGATGGTGGCTTTTCCATGGCGGCCAGAAGATCGAAGAAGTGGGACTGA 1395 45.59 MATESASEVSASPVGSYIGSTISLITKCEIRYEGILYHLNIQESTIGLANVRSYGTEGRKIDGPQILPNDEVYEYILFRGSDIKDLQLKSPSFAEMDKQIHDGSVIQSKHAGVSTSPLYPSVGCETSTVSNQSQDSLAFNNGQYPSKLSSHQSVAAVMTSTSSFPSVWQEIGNNKAQITGKPIFHPTSILSRQSVLKTAPSISGSGPLPTLPAPSLTPYQLSQSGAEVLSSTKKLCVDARNLGASTHIASNSSISIAAVEHQTPSFPSLREMPAQQFTEEFDFQAMNEKFKKDEEERHWAIPRAKPAYNKDEFFDTISCNSLERGSRNGHSRFSRPMKFGSEFTEEFDFQAMNEKFKKDEEERHWAIPRAKPAYNKDEFFDTISCNSLERGSRNGHSRFSRPMKFGSETSGGLPHMGGNVGYGVRRAIHDAKEARVRVATMENPITKKLDGGFSMAARRSKKWD 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3454941 3467800 + Cp4.1LG02g02940.1 Cpe02g00579 464528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00579 464 Pfam Scd6-like Sm domain 17 90 IPR025609 -
Cpe02g00579 464 ProSiteProfiles DFDF domain profile. 269 305 IPR025762 -
Cpe02g00579 464 ProSiteProfiles FFD box profile. 372 387 IPR025761 -
Cpe02g00579 464 SUPERFAMILY Sm-like ribonucleoproteins 16 92 IPR010920 -
Cpe02g00579 464 CDD LSm14_N 14 88 IPR025609 -
Cpe02g00579 464 PANTHER SCD6 PROTEIN-RELATED 8 339 - -
Cpe02g00579 464 PANTHER SCD6 PROTEIN-RELATED 341 424 - -
Cpe02g00579 464 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 8 339 - -
Cpe02g00579 464 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 341 424 - -
Cpe02g00579 464 SMART FDF_2 341 414 IPR019050 -
Cpe02g00579 464 SMART FDF_2 275 332 IPR019050 -
Cpe02g00579 464 SMART LSM14_2 11 111 IPR025609 -
Cpe02g00579 464 Gene3D - 8 92 - -
Cpe02g00579 464 ProSiteProfiles FFD box profile. 306 321 IPR025761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00579 K18749 LSM14, RAP55, SCD6; protein LSM14 - pvy:116138565 210.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01371 Cpe-Chr1:8244492 Cpe02g00579 Cpe-Chr2:3454941 4.52E-15 dispersed
Cpe02g00579 Cpe-Chr2:3454941 Cpe09g00267 Cpe-Chr9:1553428 2.14E-08 dispersed
Cpe02g00579 Cpe-Chr2:3454941 Cpe13g00029 Cpe-Chr13:243805 7.59E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g953 . . . . . . . . . . . . . . . . Cpe02g00579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010870 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 2 1 0 0 1 0 1 1 0 1 1 18 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00579 Cpe_Chr02 FPKM 24.228342 27.4132 24.629725 24.391897 24.497601 25.18672 25.167431 24.714211 21.548229 22.672092