Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00587 ATGATGTCGATGCGGAGAACACTGGCTTGCTGCACAAGGGACCGAGGGATCAGCCTGGACATGGACGAACAAGAGAGGCTCCGAGGAGCTTCTGGTGTCGTGGCTTTTGAGGTTGAGTTTGTAGAGATGTTCTGCTTCAGCTCCGTCGTGAAACGCCGCTGTGAAATCGGCCTTTCGGATTCAGTTGCCAAAGAAGATAACAAGATGATGTCGATGCGGAGAACACTGGCTTGCTGCACAAGGGACCGAGGGATCAGCCTGGACATGGACGAACAAGAGAGGATTATGACTTTTAATGGTCTTGAGAGTTGCGTTTTAAACAATCAAGCCTACGAAAATGAAAGCAGATCAAGCAGAGCAGACGAATGTACAACTGACTCATTGGAGGATCATGATTCAAGCTGTTCTTCAAGCAAGGATGCTTGTGGTTCTTCCTCCTCAAAATGGTTAGCAATGCATAGGGACGAGCAGGACTTGGATGAATGGGAACTACCAGAAAGCCCTCAACATTTTTACATGAAAGAGAAACCTGATTACACTGTTCAGGTTTCAGACGTGGAAGCAATGAAAGAAAAGTTCACAAAACTATTGCTTGGTGAAGATGTCACAGGAGGGCAGAAAGGGCTGAGCTCTGCCTTGTCTTTGTCTAATGCCATTACAAATCTAGCGGGTGAACAATACATTACATTTCTTATTCATTTCAATGGTACACTGGATTCAATGGTGAAGACCGAGTTTTGGTATACAGAAGTAGGTAGCAGGGCTGAAGGAAAAAGCAAGAGTATGGGCCAAAGCACGAGGTGGTGGCTTCCAATACCGCAAGTACCATCCATTGGGCTATCTGAGAATGAGAGGAAGAAATTGCTCTACCATGGCCGGGTTGTACATCAAGTATTCAAAGCTGCCAAATCCATCAATGAAAGTGTTCTTTGTGAAATGCCCGTACCAACTGTCATAAGAGAGGCAGTCCGAGCTTCTGGAAAAGCAACCCTCAGTGAAGAACTATATAAGATTTTGACATCAGAATCTGGGCCAGCTGAGAACATGTTGAATCAGCTTCATCTGAAATCTGACCACGGAGCTCTTGAGGCCATAAACCGCTTGGAAGCTGCAATATTCTCCTTGAAAGAGAAATACACTGAACAAAATGGCAATAAATCTCCAGTTCGAACTGCTTGGCCTTTTGTCAAGGACCCAATGGCTGAGAAGGATAAGCTGAAATTACTCTCTGATCGAGCAGAGCTTCTCCTACAGCTACTCAAATCGAAATATCCAAATCATCCCCAAACGTTTCTTGATGTTTCAAAAATCCAAGATGGGAAGGATGTTGGACATTCGATACTCGAAGCGTATTCCCGGGTGCTCGGAAACCTGGCATACAGCATACTGACCAGAATTATAGATGTTCTGCAAGAGGATGCTCTGTGCAACCCCAATTCACCTACACCAACATGTTGTTTTCCAGGAATGAATCTGTCGAACTTTCGTAACGATCAAATGGCCACTCTCCATGCATGGCAGCCGCTCATCGATCGCTCAAAACAATCCGAATACGACATTCTCAGCCAGAAAAGTTAA 1578 45.12 MMSMRRTLACCTRDRGISLDMDEQERLRGASGVVAFEVEFVEMFCFSSVVKRRCEIGLSDSVAKEDNKMMSMRRTLACCTRDRGISLDMDEQERIMTFNGLESCVLNNQAYENESRSSRADECTTDSLEDHDSSCSSSKDACGSSSSKWLAMHRDEQDLDEWELPESPQHFYMKEKPDYTVQVSDVEAMKEKFTKLLLGEDVTGGQKGLSSALSLSNAITNLAGEQYITFLIHFNGTLDSMVKTEFWYTEVGSRAEGKSKSMGQSTRWWLPIPQVPSIGLSENERKKLLYHGRVVHQVFKAAKSINESVLCEMPVPTVIREAVRASGKATLSEELYKILTSESGPAENMLNQLHLKSDHGALEAINRLEAAIFSLKEKYTEQNGNKSPVRTAWPFVKDPMAEKDKLKLLSDRAELLLQLLKSKYPNHPQTFLDVSKIQDGKDVGHSILEAYSRVLGNLAYSILTRIIDVLQEDALCNPNSPTPTCCFPGMNLSNFRNDQMATLHAWQPLIDRSKQSEYDILSQKS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3509024 3519978 + Cp4.1LG02g02930.1 Cpe02g00587 464536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00587 525 ProSiteProfiles PRONE domain profile. 176 223 IPR005512 GO:0005085
Cpe02g00587 525 ProSiteProfiles PRONE domain profile. 231 483 IPR005512 GO:0005085
Cpe02g00587 525 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 14 237 489 - -
Cpe02g00587 525 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 14 87 224 - -
Cpe02g00587 525 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 237 476 IPR005512 GO:0005085
Cpe02g00587 525 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 184 224 IPR005512 GO:0005085
Cpe02g00587 525 MobiDBLite consensus disorder prediction 115 142 - -
Cpe02g00587 525 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 237 489 IPR038937 GO:0005085
Cpe02g00587 525 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 87 224 IPR038937 GO:0005085
Cpe02g00587 525 Gene3D PRONE domain, subdomain 1 231 343 - -
Cpe02g00587 525 Gene3D PRONE domain, subdomain 1 178 230 - -
Cpe02g00587 525 Gene3D PRONE domain, subdomain 1 348 481 - -
Cpe02g00587 525 MobiDBLite consensus disorder prediction 115 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00587 - - - cmos:111446300 581.637
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00587 Cpe06g00592 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00587 Cpe-Chr2:3509024 Cpe16g00338 Cpe-Chr16:5176664 4.23E-28 dispersed
Cpe02g00587 Cpe-Chr2:3509024 Cpe06g00593 Cpe-Chr6:3631884 1.08E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g942 . . . . . Bpe07g00049 . . . . . . . . . . Cpe02g00587 . . . . . . . . . . . . . . . . Cone6ag0886 Cone9ag0890 . . . . Blo03g00905 . . . . . . Bma12g00627 . . . . . . . . Cpe06g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003226 0 5 2 2 2 0 2 1 0 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 9 2 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00587 Cpe_Chr02 FPKM 64.446846 72.632904 55.343315 55.575279 77.058975 73.533539 74.921906 59.018814 60.02293 64.243195