Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00590 ATGGAGGCTATTCGGAAGCAAGCCAGCAGATTCAGGGAACAGGTTGCGAAGCAGCAACAGGCCTTGATGATAAAATTAGGGCATTTCGGTACGGAATCGATCCTGGCTGATGAAGCTGAAACTCAGTGCAGTCAGCAGCTTCAGAATCTTTACAATTCCACCAGGGCAACTAAGCATTTTCAGAAGAGTATTGTTCGAGGCGTTGAAGGCTTTATTTCTGTGAGCTCAAAGCAAATGGCGATCGTGAGAAGATTAGCTGATGATTGTAGCAAATATGGAGCCAATGACCAAAATAGCTGTCCTGCACTTGCAACAGCTGTTCATAATTTCAGTACATCCCATAATTCAATTGAAGAAGAGAGGGAAGCTTTACTTGGAATCCTGGGCGATCAGGTAATTCTCTCCTGTTTGGTTATGCTGAATTCTGGTCGATCAGGGTATAAACTTCAGGTATGTGAACCTCTACGGGCACAAATAACAGGGGCACCTCTGGAGGATGCCCGTCATTTAACTCACCGCTACGATAAACTGCGACAAGAAGTGGAAATCCAGGCAGCCGAAGTTTTGAGACGCCGAGCTAAGTCAAGGGACTCTTCTGTTTCAGCCGAGAGTGCCATGAGGCTTCAAAATGCAGAAGCAAGATTAACTGAACTTAAATCTACAATGATGGCACTAGGTAAAGAAGCAACCACTGCTATGCAATCGGTTGAGGCCCAACAGCAACAAGTAACTTATGAAAGACTTCGTACCATGGTGGACGCTGAGAGATCTTACCACCAGCATGCCCTTACTAATTTAGAAAGGCTGAATGATGAGTTAATTCTGCTGACGCAGTCAGATGGGTCTTTGTCACAACCACCAATTAGAAATGGAGAAGAACGTGATCAAACATCTGAATTCAAAGATACGAAGTCGAATGAGTCTGATTCTCAGAGGCTTCTTAATGAAAACAAGGACTACATTATTGCAAAAGTTATTCACCCATTTGAGGCTCAGGCAGAAGGGGAGTTAAGCTTATCCATCGACGATTATGTCACGCTTCGTCAGGTGTGGCCTAACGGATGGTCGGAAGGAGAATGCAAGGGAAAAGCTGGATGGTTTCCCTCCGCATACGTCGAGAAGCAAGAAAAGGTATCGGCGAGCGAGTTATTGCAAGTACAATCAACTTCTCAATCTTTATCTTGTTCTAAATCCCCATGA 1200 44.58 MEAIRKQASRFREQVAKQQQALMIKLGHFGTESILADEAETQCSQQLQNLYNSTRATKHFQKSIVRGVEGFISVSSKQMAIVRRLADDCSKYGANDQNSCPALATAVHNFSTSHNSIEEEREALLGILGDQVILSCLVMLNSGRSGYKLQVCEPLRAQITGAPLEDARHLTHRYDKLRQEVEIQAAEVLRRRAKSRDSSVSAESAMRLQNAEARLTELKSTMMALGKEATTAMQSVEAQQQQVTYERLRTMVDAERSYHQHALTNLERLNDELILLTQSDGSLSQPPIRNGEERDQTSEFKDTKSNESDSQRLLNENKDYIIAKVIHPFEAQAEGELSLSIDDYVTLRQVWPNGWSEGECKGKAGWFPSAYVEKQEKVSASELLQVQSTSQSLSCSKSP 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3531737 3536161 + Cp4.1LG02g02910.1 Cpe02g00590 464539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00590 399 SUPERFAMILY BAR/IMD domain-like 41 273 IPR027267 -
Cpe02g00590 399 MobiDBLite consensus disorder prediction 292 312 - -
Cpe02g00590 399 Coils Coil 1 21 - -
Cpe02g00590 399 SUPERFAMILY SH3-domain 322 386 IPR036028 GO:0005515
Cpe02g00590 399 SMART SH3_2 321 376 IPR001452 GO:0005515
Cpe02g00590 399 ProSiteProfiles Src homology 3 (SH3) domain profile. 318 377 IPR001452 GO:0005515
Cpe02g00590 399 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 1 1 384 - -
Cpe02g00590 399 Coils Coil 167 187 - -
Cpe02g00590 399 MobiDBLite consensus disorder prediction 280 312 - -
Cpe02g00590 399 Coils Coil 208 228 - -
Cpe02g00590 399 PANTHER SH3 DOMAIN-CONTAINING 1 384 - -
Cpe02g00590 399 Pfam Variant SH3 domain 325 373 IPR001452 GO:0005515
Cpe02g00590 399 Gene3D Arfaptin homology (AH) domain/BAR domain 35 312 IPR027267 -
Cpe02g00590 399 Gene3D SH3 Domains 321 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00590 - - - csv:101211108 601.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00590 Cpe-Chr2:3531737 Cpe05g01290 Cpe-Chr5:9008670 1.69E-102 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g923 . . . . . . Bma07g01221 . . . . . . . . . Cpe02g00590 . . . . . . . . . . . . . . . . Cone6ag0875 Cone9ag0881 . . . . . . . Bda09g00465 Bpe08g01063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012200 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 0 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00590 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0