Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00603 ATGGCGAGCGATCAATCTCCGCCAAGACCGGGTGAAGACGCGCATGAAGATGAACAGAAGGGCTCGAGCTCGGTGAAGGGAAAAGCTATGGCGGGAAAGACCTTGGGGTGGGTTTTGGCTCTTATAGTGGCTGTCGTTGCGCTTTTTGTCGGGCTTTCCTTCAAATCCCGATATCGGATCGCTCCTTCCTTCCCTTCCCCTCAACTGAAACTCTTCAAAGTTGATGAGCTAGCTTTGTATAATGGAACTGATGAGGGATTGCCTATTCTTCTTGGAATTCTTGGATCAGTCTTTGATGTCACAAAAGGAAAATCTCACTATGGTGTGGGAGGAGGTTATCATCACTTTTCAGGAAGAGATGCTTCTCGTGCATTCGTATCAGGAAACTTCACAGGGGAAGGACTCACTGATTCCTTGCGGGGTCTGTCAAATGCTGAGATCAAGAGCGTCGTTGAATGGCGGGGCTTTTACCATAAATCCTACACATTTGTAGGTAAGTTGGTGGGTCTTTACTATGATGATCAAGGAAATCCCACTAAGCATTTAAAGGGAGCTGAGGCAAAGGCTGCCAGAGGCGCACAACTTTTGAAGAAACAAAAGAAAGAGGAGGATAAACTGCCAAGCTGTAATTCGAAATGGAGTCAGGATGAAGGTGGTGAGGTCTGGTGCGATAATGGCTTCCCGAGGTTGATACAGAGACCATTAGAAATCGCGTTGACAGGGAAGATGAGCAAACGATGCGCTTGCTTTCGAGAAGACCAGCTGGGAGAGCCAGGATTAGAAGTTTATGAAGGTTGTGACTACCAAGCGAAGACCTGCCGTGTTTAA 828 47.34 MASDQSPPRPGEDAHEDEQKGSSSVKGKAMAGKTLGWVLALIVAVVALFVGLSFKSRYRIAPSFPSPQLKLFKVDELALYNGTDEGLPILLGILGSVFDVTKGKSHYGVGGGYHHFSGRDASRAFVSGNFTGEGLTDSLRGLSNAEIKSVVEWRGFYHKSYTFVGKLVGLYYDDQGNPTKHLKGAEAKAARGAQLLKKQKKEEDKLPSCNSKWSQDEGGEVWCDNGFPRLIQRPLEIALTGKMSKRCACFREDQLGEPGLEVYEGCDYQAKTCRV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3635048 3640510 - Cp4.1LG02g02690.1 Cpe02g00603 464552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00603 275 SMART Cyt_b5_2 72 168 IPR001199 -
Cpe02g00603 275 MobiDBLite consensus disorder prediction 1 25 - -
Cpe02g00603 275 MobiDBLite consensus disorder prediction 9 23 - -
Cpe02g00603 275 Gene3D - 66 169 IPR036400 -
Cpe02g00603 275 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 64 168 IPR036400 -
Cpe02g00603 275 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 39 270 - -
Cpe02g00603 275 PANTHER NEUFERRICIN 39 270 - -
Cpe02g00603 275 Pfam Cytochrome b5-like Heme/Steroid binding domain 75 135 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00603 - - - cmax:111480426 535.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00603 Cpe-Chr2:3635048 Cpe11g00288 Cpe-Chr11:1559658 2.07E-18 dispersed
Cpe02g00603 Cpe-Chr2:3635048 Cpe15g00320 Cpe-Chr15:4256949 2.42E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g882 . . . . . Bpe07g00056 Bma07g00965 Bma14g00112 . . . . . . . . Cpe02g00603 . . . . . . . . . . . . . . Cone8ag0527 Cone12ag0529 . . . . . . Blo03g00841 . Bda07g00138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012706 1 1 1 1 1 0 1 0 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00603 Cpe_Chr02 FPKM 26.393421 29.959204 47.002819 47.560341 41.963425 37.003349 40.522278 26.016039 25.873198 26.694185