Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00625 ATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCTCCGTCGAGATCGGGATCCTCTTCACGTTCCCGCTCATACTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCACGCTCCAGGTCACGGTCTGTATCTGTGTCCCATTCCAGGTCCATTTCCTCGTCGTCGTCTCCCTCCCGCAGTGCTAGTTCTCGGAGCCGAAGTCCCCCTCCTCAGAGAAAGAGGAAACCATCACCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAGAGAAATCTTCAGTAATTTTGGTGAAGTAGTCAATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCCCAAATTGATGGAAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAAATGGCATCACCTCCAAGGACTGCTGCAGCTGCTTCTAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGACGATATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCGTCACCTAGAAGACGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCCAGAAGACAACCTGATTCTCCACGCCGCCGTCCGGAGTCTCCTCCCCGTCGCCGTGTTGACTCTCCTCCTAGAAGGAGGCCTGCATCACCAATGAGAGGTGGCCGTTCCCCATCACCTTTGGGAAGGCGACATAGATCTCCCCCAAGGCCCTCTCCAAGAAGAATTCGTGGCAGCCCTGTTCGGAGACGTTCACCACCTCCTCCTAGGCGCCGTACACCTCCTCGACGGGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCCATTAGAAGACCAGGTCGATCACGTTCCCGGTCATTTTCACCACGGAGAGGTCGGCCGGGAGCTGCTGGTAGACGTGGGAGATCATCATCTTACTCTGCATCGCCAAGTCCACGGAAGGTCGCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCATTGAGAGGTAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCGCAAGCCATAA 1164 53.52 MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSASSRSRSPPPQRKRKPSPVRESLVLHIDALSRNVHEGHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPGAAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3796385 3802356 - Cp4.1LG02g02450.1 Cpe02g00625 464574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00625 387 Gene3D - 11 168 IPR012677 -
Cpe02g00625 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 160 IPR000504 GO:0003723
Cpe02g00625 387 SMART rrm1_1 83 156 IPR000504 GO:0003723
Cpe02g00625 387 MobiDBLite consensus disorder prediction 1 80 - -
Cpe02g00625 387 SUPERFAMILY RNA-binding domain, RBD 16 157 IPR035979 GO:0003676
Cpe02g00625 387 PANTHER BNAA09G56240D PROTEIN 1 379 - -
Cpe02g00625 387 MobiDBLite consensus disorder prediction 159 387 - -
Cpe02g00625 387 MobiDBLite consensus disorder prediction 224 248 - -
Cpe02g00625 387 MobiDBLite consensus disorder prediction 182 207 - -
Cpe02g00625 387 CDD RRM_RNPS1 84 156 IPR034201 -
Cpe02g00625 387 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 379 - -
Cpe02g00625 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 154 IPR000504 GO:0003723
Cpe02g00625 387 MobiDBLite consensus disorder prediction 269 330 - -
Cpe02g00625 387 MobiDBLite consensus disorder prediction 371 387 - -
Cpe02g00625 387 MobiDBLite consensus disorder prediction 10 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00625 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 - csv:101216970 238.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00625 Cpe-Chr2:3796385 Cpe06g00736 Cpe-Chr6:4616374 4.05E-14 dispersed
Cpe02g00625 Cpe-Chr2:3796385 Cpe06g00577 Cpe-Chr6:3514196 5.89E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g998 . . . . . . . . . . Cma01g01306 Cma09g00736 Car01g01114 Car09g00646 . . Cpe02g00625 . . . . . . . Cla11g01601 Cam11g1667 Cec11g1696 . . Cmu11g1637 . . . . . Lsi04g01879 . . Cme07g00708 . . . . . . . . . Cmo01g01363 Cmo09g00728 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008093 2 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00625 Cpe_Chr02 FPKM 4.570226 4.999142 2.496024 2.374631 5.096264 4.665932 5.96713 1.94544 1.36294 2.11729