Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00648 CTCCATACAGTGGGAATTCAAGCACCAGATCAAAACTTATTTCCTAGCGCCATCGGAACACTACACCAACCGTTAACAGCCGTCAGAAGGAAGCTGCGTTCCCCTTTTTCGAACCTGGGAAAGGAAGAAACCGTTCTTTGTGCGAGTGAAATTGTTGATTCGAGAGAAGAAAAGGGTCGAAGAGTGGGAGTGGATTTTTGGAACGGAGCCCTTTTGAGTTCGTGTGTTCAAAGGGTAAGAATCATGGACTGCGAAGTGAATGAAAGCGAGGAGTACTCGCTGCTCAAGAATCTGAGGCTCGAAATCGATGGAGATGATGGGTGTTTTAATATCTGTTTTTGGGTTTATCTTATGAATTCTTCCACATTCCCTGTTTCAATCCTTCAGGTACAGTTAGATTCATCAGGCATGAGTTCTTTTCTGGTTCTAAGTGAAAGGAATAGAATGAAGATTATGCCTTTGCCCGCCTTACACAAACCCGATGAACGTTCCAGCGCTGGTAGTTCTTCTTCCGGGAATGAAGTTCCACACGAATGTCTAGACATCGATTTTCCCATGGAAAAATGGGTTCATATTGGATGTGAGGTCTCCACCGATTTTGTCAGACTGCATATTAATGGGAAAATGGTTGGAGAAAAGCCTATGTCATCTTCACTCGGTGAAGATGCCATTCCAAGGGGTTCGGGTAGGATTGTTTTGGTCAACAATGGTGAAGACGACAGCCTGCAAGGCTATGTTCATAATGCAAAAGTTTTGCATTCAGTATCATCGATCAAGGATTCTTATGTCGAGGACCTACCCGTTAAATTATTTATCGACAACTCTTCCACCACGGAGATTGAAGAGGGCAGTGATGGCATATGGAATATAGTTGGTGGCAAGCCATCTTGTCGTCGAAATTTCTCGTTGGAAGTTATGCTGTTAGATTCCTCTGGCCAGCCTGTTCTTAAGGAACTCGAGGTTGTTGCCTCCCTCATCTATGCTGAAAGTGGGGAAGCTGTGGAGAAGTCAAGTGATGAAGAAGCTCCCCTTTTGGCAAGCTATGATGGTCTATCTTCTAAATGTGATAACAAGCTCTTCCGCATAAGATTTTGCATACCTAAATTTGAGGGGTATCCCTTCTTCGAGGCTCTCTCTTCTCCAATTCGCTGCATCTCAAGGAGTCGAACTACTCGTACGTCAACTTTGATGTGGAAAAGATCTGCTGTTCATGGACTCGATGGATCGCGGCCATCTGGTTTGGACAACGGAACCTCAGAACACGAGCATGTTTCAATAGATGAAGAAAAACCAAGTCCACTATTGAAGAGGATTAAAGTGGGACAAGATAGAGTTTTACCGAACTCTAATGACGATCGTGCTTTACGGCAACCCGATGAGGAATGCAACTCTCATTCTTTTACTGCCAATGAGGCTGAAAATGGATTTGGCACAAATTTAAGAGAGAGACCCAAAAATAATGGATCAAGAAGAGCATCCCCATCAGACTCTGCAAGCACTCAAGCCAGACATTTGGCTCCGAATAGAACTACAACCAGTGGAAACCCGATATCGGATGTGAACATTTTCAAATATTGCCTAGCAGGTTTACCTGAGAGGTCACATCTGCTCAAGGAGATTGCAACATCCGTGTCGCAGGAAGAAGTTTCGGAATTTGCCGACCATGTTTCCCTATACTCTGGATGCTTACACCACAGGCATCAAATCCTAATGTCAAGAAAATTAATAGAAGAAGGAATACAGGCTTGGAATTCAATCTCTCAAAACAAGCATCATGTTCAGTGGGAGAGTGTTGCTTTTGAGATTGAAGAACAATTCATGAGAATTTCTGGCTGTAGCTCTAGATCTCTCACTCAGCAGGACGTCGAGTTGCTGCGGAGAATTTCTGGTTGTCACGAGTATCTGGCTCGAGAGAACTTCGAGAGAATGTGGTGTTGGTTATATCCTGTAGCTTTTACGTTATCCAAACAATGGATCAATGCAATGTGGAGTTCGTTATCCCCCAAATGGATCGAAGGATTCATTACGAAAGAAGAAGCCGAATTATCGCTTCAAAGCTCGACGGGTCTTCAAGAGCCTGGGACGTTTATTCTTCGGTTTCCCACTTCGAGAAGCTGGCCTCATCCTGATGCTGGTAGCTTGGTTGTCACCTATGTTGGCAATGACTATGCTCTTCATCATAGACTTCTTACACTTGATCACTTTTTCAGTGCTGCTGAAGGAAAGAAGAATATGAGAAGCCTTCAGGACATGCTTCTTGCAGAACCCGAGCTCTCTCGATTGGGAAGGACAATTCGAAGTCGTTGA 2307 44.13 LHTVGIQAPDQNLFPSAIGTLHQPLTAVRRKLRSPFSNLGKEETVLCASEIVDSREEKGRRVGVDFWNGALLSSCVQRVRIMDCEVNESEEYSLLKNLRLEIDGDDGCFNICFWVYLMNSSTFPVSILQVQLDSSGMSSFLVLSERNRMKIMPLPALHKPDERSSAGSSSSGNEVPHECLDIDFPMEKWVHIGCEVSTDFVRLHINGKMVGEKPMSSSLGEDAIPRGSGRIVLVNNGEDDSLQGYVHNAKVLHSVSSIKDSYVEDLPVKLFIDNSSTTEIEEGSDGIWNIVGGKPSCRRNFSLEVMLLDSSGQPVLKELEVVASLIYAESGEAVEKSSDEEAPLLASYDGLSSKCDNKLFRIRFCIPKFEGYPFFEALSSPIRCISRSRTTRTSTLMWKRSAVHGLDGSRPSGLDNGTSEHEHVSIDEEKPSPLLKRIKVGQDRVLPNSNDDRALRQPDEECNSHSFTANEAENGFGTNLRERPKNNGSRRASPSDSASTQARHLAPNRTTTSGNPISDVNIFKYCLAGLPERSHLLKEIATSVSQEEVSEFADHVSLYSGCLHHRHQILMSRKLIEEGIQAWNSISQNKHHVQWESVAFEIEEQFMRISGCSSRSLTQQDVELLRRISGCHEYLARENFERMWCWLYPVAFTLSKQWINAMWSSLSPKWIEGFITKEEAELSLQSSTGLQEPGTFILRFPTSRSWPHPDAGSLVVTYVGNDYALHHRLLTLDHFFSAAEGKKNMRSLQDMLLAEPELSRLGRTIRSR 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3987382 3993600 - Cp4.1LG02g02220.1 Cpe02g00648 464597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00648 768 MobiDBLite consensus disorder prediction 416 437 - -
Cpe02g00648 768 ProSiteProfiles Src homology 2 (SH2) domain profile. 670 752 IPR000980 -
Cpe02g00648 768 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 89 765 - -
Cpe02g00648 768 SUPERFAMILY Concanavalin A-like lectins/glucanases 107 252 IPR013320 -
Cpe02g00648 768 SUPERFAMILY SH2 domain 666 752 IPR036860 -
Cpe02g00648 768 MobiDBLite consensus disorder prediction 461 483 - -
Cpe02g00648 768 CDD SH2_SHA 659 766 - -
Cpe02g00648 768 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 89 765 IPR001217 GO:0003700|GO:0006355|GO:0007165
Cpe02g00648 768 MobiDBLite consensus disorder prediction 407 514 - -
Cpe02g00648 768 MobiDBLite consensus disorder prediction 490 514 - -
Cpe02g00648 768 Gene3D SH2 domain 656 766 IPR036860 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00648 - - - bhj:120086005 1134.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g12 . . . . Bpe09g00273 . . Bma13g00915 . . Cma01g01277 . Car01g01092 . . . Cpe02g00648 Bhi09g03581 Tan01g4242 . . . . . . . . . . . . . . . . Lsi04g01968 Csa04g02247 . . . Blo10g00716 . Bda12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00648 Cpe_Chr02 FPKM 1.631476 1.86738 4.413116 5.993266 13.910605 13.285469 15.501005 3.860848 3.947132 4.160353