Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g00649 | ATGGATTCCCTCCATGCCTTACCTCCTCTCAAAAGGCTCATAATCCTTCAAGAACTAGAACGAAAGCAGCAAGAACAGGATCAATCTCTCCATTCTTGTTCCCTCCCTGCGAAGAAGCGAAAGGAGTCTCGTGATTCATCAATCTTCATCCCTGACGCTACATTACCCCACCGAACCGCCATTTCCGCTTCTCCTTACTGCTTGCCGACGAAGAAAAGAGTCTGGGCGTTTCATCCTGATTTTGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCTCCTCCGGAAGAAATATCGATTTCAGAAGCAGAATCAGAGAGAGAGGAAAAAGAGAAAAAGGAAAGCTCTGATATTGAAATTGAGCATCAAGAGATTGAAGCTATCCAAGAAGAAGAAGATGATGATGAGGATGAAGAGGACGGAATCCTCTGTGCGATTTGTCAAAGCACGGATGGAGACCCTTCTGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACATGCTTCGTGCTACGGCAATCCTCTGGTGAAGAATGTACCAGAAGGTGATTGGTTCTGTACCCAGTGCTTAGCTTCTTCGTCTTCCAAGACGGAGAAGAAAGCTTCTGAAACACCATTTTCATGCTGTCTTTGTCCTCTCAAAGGAGGGGCAATGAAGCCAACAAACGATGGCCGATGGGCTCATATTGTTTGTGGCCTCTTTGTTCCTGAAGTGTTCTTCGAAGACCCAGATGGCAGAGAAGGGATTGATTGCTCAAAGATTCTCAAAAGGAGATGGAAATCTCAATGCTATATCTGCAAAACCTCTGAAGGTTGTGCCATTGATTGCTCAGAGGCTAAATGCAGTTTGGGTTTTCACGTTACTTGTGGGTTGAAGGAGGATCTTTGCATTGAGTATCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAAAACCCATACTGATTTGTGGAAGAAGCAACAACTAACAGGAAAGTTCAAGATTGTGGCCAGAGATGAAAGTAAGTAA | 1026 | 44.74 | MDSLHALPPLKRLIILQELERKQQEQDQSLHSCSLPAKKRKESRDSSIFIPDATLPHRTAISASPYCLPTKKRVWAFHPDFAPESLDLNVEYKPPPEEISISEAESEREEKEKKESSDIEIEHQEIEAIQEEEDDDEDEEDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCTQCLASSSSKTEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKRRWKSQCYICKTSEGCAIDCSEAKCSLGFHVTCGLKEDLCIEYQEGRRSGAIVAGFCKTHTDLWKKQQLTGKFKIVARDESK | 341 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 3995301 | 4003029 | - | Cp4.1LG02g02200.1 | Cpe02g00649 | 464598 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g00649 | 341 | MobiDBLite | consensus disorder prediction | 24 | 50 | - | - | |
| Cpe02g00649 | 341 | Pfam | PHD-zinc-finger like domain | 210 | 307 | - | - | |
| Cpe02g00649 | 341 | CDD | PHD_BRPF_JADE_like | 144 | 192 | - | - | |
| Cpe02g00649 | 341 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 322 | IPR013083 | - | |
| Cpe02g00649 | 341 | MobiDBLite | consensus disorder prediction | 98 | 123 | - | - | |
| Cpe02g00649 | 341 | SMART | PHD_3 | 265 | 320 | IPR001965 | - | |
| Cpe02g00649 | 341 | SMART | PHD_3 | 144 | 193 | IPR001965 | - | |
| Cpe02g00649 | 341 | Coils | Coil | 119 | 139 | - | - | |
| Cpe02g00649 | 341 | SUPERFAMILY | FYVE/PHD zinc finger | 131 | 199 | IPR011011 | - | |
| Cpe02g00649 | 341 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 200 | IPR013083 | - | |
| Cpe02g00649 | 341 | Pfam | PHD-finger | 145 | 193 | IPR019787 | - | |
| Cpe02g00649 | 341 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 208 | 320 | IPR034732 | - | |
| Cpe02g00649 | 341 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 108 | - | - | |
| Cpe02g00649 | 341 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 120 | 340 | - | - | |
| Cpe02g00649 | 341 | ProSiteProfiles | Zinc finger PHD-type profile. | 142 | 195 | IPR019787 | - | |
| Cpe02g00649 | 341 | MobiDBLite | consensus disorder prediction | 88 | 123 | - | - | |
| Cpe02g00649 | 341 | PANTHER | PHD FINGER PROTEINS | 120 | 340 | - | - | |
| Cpe02g00649 | 341 | PANTHER | PHD FINGER PROTEINS | 3 | 108 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g00649 | Cpe06g00531 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00649 | Cpe-Chr2:3995301 | Cpe06g00531 | Cpe-Chr6:3188388 | 0 | dispersed | |
| Cpe02g00649 | Cpe-Chr2:3995301 | Cpe17g01004 | Cpe-Chr17:7601005 | 2.67E-29 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49020 | PF13832 | zf-HC5HC2H_2 | 3.70E-29 | CL0390 | Cpe | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g00649 | K11380 | - | csv:101203744 | 528.48 |