Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00663 ATGAGAAATCCCTTTCTCGTCCTCGCTTTCATTGTTCCAATCGTTAGTTTTCAGGCTCATTCTGCTCCTTCTGGACTATTGGCAAGGCAGTTGTCTTCTGTTCTTAAATGGACTGGTTCTTCGTCCAAAACACCTCAACCAGATGGGAATGCTCTTCAGTTTGAGAGTGGCTACTTAGTTGAGACTATTGTTGAGGGAAATGAAATTGGAATGGTTCCTTACAAGATTCGCATCTCTGAGGATGGAGAACTCTTTGCTGTCGATTCGGTTAATAGCAATGTCGTCAAGGTTTCTCCACCGTTGTCTCGATATAGTCGAGCGAGATTGGTTGCCGGGTCTTTCCAGGGCTACAAAGGGCATGTTGATGGGAAACCAAGCGATGCTCGGTTCAATCAGCCGAAAGGCGTGACGATGGATGACAAAGGAAATGTGTATGTTGCTGATACCTTGAACCTTGCCATCAGAAAGATTGTTGATGCTGGCGTGACAACAATTGCAGGAGGCAAGACAAATGTTCCAGGATATAGCGATGGGCCCGGTGAGGAAGCGAAGTTTTCGAACGATTTTGATGTCATATATATCAGGCGTACCTGTTCGTTGTTGGTTGTCGATAGAGGCAACGCTGCACTTCGCCAAATCACTCTGAACAAAGAGGATTGCGATTATCAGTACGGTTCCGTTTCTACCTCAGACGTTGCGATGTTCGTTGGCTCTCTTCTCGTAGGATACGTTACATATATGCTTCAACATGGATTCGGGCTGTCGTTCTTCTCTTTTATTGTACCGAGTGAACGTTCGGAGTCTAAAACGAACGAGCCGAGCAAGGGAAAACACACTCCGCTCGTAAGTACAATAAAAGAAGAAACATGGTGGGAGTCTTTCCGACAGGTCTTTACCGAGCTTTACAAGCAGGCGCTCGAGTCAGTACCGAGCAACCTCAAATCCTTCCTTCCTTCATACCATAAGAAAGGGCTGACACCTTTGAAAGATACTCTCAAGATGCCAGAAGATGAAATCAAAACCAATGTGACCTTAAAACAAAGCACTGTCACTCCTCTCTCTGAAACCAAGCATGCCTCACTCAAACATGATAAAATGAAGCCACCAAAAATGAAGTCAAGTAGTTTCAAGAACAACCCGTCTCTCTTAAACAAGCACGGTGCCGAGTTTTACGGGACAGGCATGGTTTCTTCATCGCATAGCCGATCCAAGGGCCAGAAGGATCGATCGAGACATCGACAAAAGGAAAAAGGATCAGAATTCTTAGCAAGCGGAGTTGGGGTCGAACCGAAACCTGCAGAGACGAGCATGGATTATAACGAGCCGATGTTCGGGCAGTACAATATGAGGAATAAGTACAGAGTTGATTCTTCTTCTTTCCATTTCTGA 1389 45.43 MRNPFLVLAFIVPIVSFQAHSAPSGLLARQLSSVLKWTGSSSKTPQPDGNALQFESGYLVETIVEGNEIGMVPYKIRISEDGELFAVDSVNSNVVKVSPPLSRYSRARLVAGSFQGYKGHVDGKPSDARFNQPKGVTMDDKGNVYVADTLNLAIRKIVDAGVTTIAGGKTNVPGYSDGPGEEAKFSNDFDVIYIRRTCSLLVVDRGNAALRQITLNKEDCDYQYGSVSTSDVAMFVGSLLVGYVTYMLQHGFGLSFFSFIVPSERSESKTNEPSKGKHTPLVSTIKEETWWESFRQVFTELYKQALESVPSNLKSFLPSYHKKGLTPLKDTLKMPEDEIKTNVTLKQSTVTPLSETKHASLKHDKMKPPKMKSSSFKNNPSLLNKHGAEFYGTGMVSSSHSRSKGQKDRSRHRQKEKGSEFLASGVGVEPKPAETSMDYNEPMFGQYNMRNKYRVDSSSFHF 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4173749 4177904 + Cp4.1LG02g02130.1 Cpe02g00663 464612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00663 462 MobiDBLite consensus disorder prediction 393 439 - -
Cpe02g00663 462 Gene3D - 46 215 IPR011042 -
Cpe02g00663 462 SUPERFAMILY NHL repeat 69 214 - -
Cpe02g00663 462 MobiDBLite consensus disorder prediction 357 371 - -
Cpe02g00663 462 Pfam NHL repeat 130 154 IPR001258 GO:0005515
Cpe02g00663 462 PANTHER NHL DOMAIN-CONTAINING PROTEIN 9 458 - -
Cpe02g00663 462 PANTHER - 9 458 - -
Cpe02g00663 462 MobiDBLite consensus disorder prediction 348 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00663 - - - csv:101206392 736.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00601 Cpe02g00663 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00601 Cpe-Chr1:3468372 Cpe02g00663 Cpe-Chr2:4173749 1.37E-175 dispersed
Cpe02g00663 Cpe-Chr2:4173749 Cpe03g00552 Cpe-Chr3:3242595 1.70E-72 dispersed
Cpe02g00663 Cpe-Chr2:4173749 Cpe13g00910 Cpe-Chr13:7759641 3.21E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g92 . . . Bda09g00547 . Bpe08g00989 . . . Cmo04g00713 . . . . . . Cpe02g00663 . . . . . . . . . . . . . . Cone6ag0200 Cone9ag0231 . . . . . . . . . . . . . . . . . Cma04g00666 . . . . Cpe01g00601 . . . . . . . . . . . . . . . Csa04g00813 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002564 1 4 1 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00663 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0