Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00673 ATGTCGCATTCTCTCAATCCCATTTCGGACTACGACCATCTCTCCGATCGGTTGCGTGATTCCCTCACTTGTGAACCCAACAAGCCTGATTTTCGCGACCTAGATCTGGGTTCCCCTGTTTCGCCATTACGGACTCGGAACCAGACTGGTGGCGGCCCTGCTGCGAGTAGTAGTTCCAGCTCGTCCGGGTCCGTTTCTGGCCGGAATGTAACGAACCCAGTTGCCAAAAGATCTGATTCGGGTCCTAATAATCATTCCGGTGAACTCTCTGGGTCTAGCGAGAGCAGCCCAACTGCGGCGGAGAGCCTCCGATCCATTGGGACTCCTAGAAATTTCAAGTCTGGTCATACTAGATCCGATTCTGGATCGAGTCATCCGTTAATCTATTCGGGTCAGTCTCAAACCTCTGTTACTTCCCCGTCGAATGTGCTTCCCACCGGTAATATTTGCCCTTCTGGGAGGGTTTTGAAAACGAGCATGCCGTCGACCAACCGGAGTTCGAGATCCGACGTTTTGGGTTCTGGGTCGGGAAATTACGGCCATGGGAGTATAATGCGGGGCCTCGGCGGTGTTAAAACCGGCGGCGTTGAATCGGTTAGTAATGTTAGCTCGAGGGCTGGTTGTGGTGGTGGTAGTGGTGGTGGTGACTCGCTGAAGAGGGCGAAACAGAGTGGGGATCCAGAGGAGTTAAAGAGAGCTGGAAATGAACAATACAAAAAGGGGCATTTTGCTGAAGCTTTGAGTCTCTATGATCGAGCCATTGCGGTTTCCCCGGCCAATGCAGCTTACCGGAGCAACCGTGCTGCTGCCTTGACCGGGCTCGGGCGGCTTGGCGAGGCGGTAAGCGAGTGCGAGGAAGCGGTAAGATTGGATCCCAATTATGTGAGGGCTCATCAGCGTTTGGCATCCTTGTTTCGTAGGTTAGGACATGTAGAGAATGCTAGGAAACATCTTTGTTTTCCCGGCGTTCAGCCCGATCCGAGCGAGCTGCTGAGACTGCAGGCAGTCGAAAGGCATATAAGCAAATGCAGGGATGCCCGTCGACTCAAAGATTGGCGAAGCGTATTGAAGGAGGCCGATGCTGCGATTGCTGGTGGAGCTGATTCTTCGCCTCAGCTGTTTATGAGTAAAGTGGAAGCTCTTTTAAAGCTTCATCAGATTGAAGATGCTGAATCCAGCTTATTAAGCATTCCGAAGTTACATCCATCGATTAATACGTGCTTACAAATGAAGTTTTTCGGGATGATTTCGGAAGCTTACTCTCATTTCATTCATGCCCAAATCGAGATGGCGCTAGGAAGGTTTGAGAATGCAGTTACGGCTGCTGAGAAAGCTGCACAGATTGATCCTCGAAATGTAGAAGTGGCAATGCTGCTTAGTAACGTTCGGTTGGTTGCACGAGCTCGTACTCGAGGCAACGATCTCTTTAAATCAGAAAGGTATACAGAAGCTTGCTCAGCATATGGGGAAGGACTTAAGCTTGATCATTCGAACTCGGTCCTCTACTGCAATCGAGCAGCCTGTTGGTTTAAACTCGGGATGTGGGAGCGGTCTATCGAAGACTGTAATCAAGCGTTACTTATCCAACCGACGTACACGAAGGCCCTCCTTCGAAGGGCTGCCTCAAATAGTAAGCTCGAAAGATGGGAGGACGCTATACGAGATTACGAAGCTTTAAGGAGGGAACTTCCAGATGACAATGAAGTTGCTGAATCTCTTTTTCATGCTCAAGTCGCGTTAAAGAAATCACGTGGTGAAGAAGTTCATAATCTGAAGTTCGGTGGCGAAGTCGAGGTGGTTTCCAGCATAGATCAGTTCCGAGCTGCGATATCGTTCCCAGGCGTCACTGTTGTTCATTTCAAAGTAGATTCCGATATACAATGCAAGCAGATATCGCCATTCGTCGACATCCTTTGTCGTCGCTATCCTTCCATCAATTTCCTCAAGGTGAATCTGGAAGATAGTCCAGCAATTGCAGATACCGAAAACGTAAGGATCGTACCGACGTTCAAGATTTACAAAAGTGGAAACCGAGTAAAAGAGATCATATCTCCGACTCACGACATGTTAGAGTACTCAGTGAGGTATTATAGCTTCTTATAG 2103 49.07 MSHSLNPISDYDHLSDRLRDSLTCEPNKPDFRDLDLGSPVSPLRTRNQTGGGPAASSSSSSSGSVSGRNVTNPVAKRSDSGPNNHSGELSGSSESSPTAAESLRSIGTPRNFKSGHTRSDSGSSHPLIYSGQSQTSVTSPSNVLPTGNICPSGRVLKTSMPSTNRSSRSDVLGSGSGNYGHGSIMRGLGGVKTGGVESVSNVSSRAGCGGGSGGGDSLKRAKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAVSPANAAYRSNRAAALTGLGRLGEAVSECEEAVRLDPNYVRAHQRLASLFRRLGHVENARKHLCFPGVQPDPSELLRLQAVERHISKCRDARRLKDWRSVLKEADAAIAGGADSSPQLFMSKVEALLKLHQIEDAESSLLSIPKLHPSINTCLQMKFFGMISEAYSHFIHAQIEMALGRFENAVTAAEKAAQIDPRNVEVAMLLSNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDHSNSVLYCNRAACWFKLGMWERSIEDCNQALLIQPTYTKALLRRAASNSKLERWEDAIRDYEALRRELPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEVVSSIDQFRAAISFPGVTVVHFKVDSDIQCKQISPFVDILCRRYPSINFLKVNLEDSPAIADTENVRIVPTFKIYKSGNRVKEIISPTHDMLEYSVRYYSFL 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4227564 4231240 - Cp4.1LG02g02040.1 Cpe02g00673 464622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00673 700 MobiDBLite consensus disorder prediction 20 179 - -
Cpe02g00673 700 MobiDBLite consensus disorder prediction 221 237 - -
Cpe02g00673 700 MobiDBLite consensus disorder prediction 41 176 - -
Cpe02g00673 700 Pfam Tetratricopeptide repeat 233 293 - -
Cpe02g00673 700 SMART tpr_5 465 498 IPR019734 GO:0005515
Cpe02g00673 700 SMART tpr_5 419 452 IPR019734 GO:0005515
Cpe02g00673 700 SMART tpr_5 499 532 IPR019734 GO:0005515
Cpe02g00673 700 SMART tpr_5 533 566 IPR019734 GO:0005515
Cpe02g00673 700 SMART tpr_5 261 294 IPR019734 GO:0005515
Cpe02g00673 700 SMART tpr_5 227 260 IPR019734 GO:0005515
Cpe02g00673 700 CDD TRX_family 604 683 - -
Cpe02g00673 700 ProSiteProfiles TPR repeat profile. 419 452 IPR019734 GO:0005515
Cpe02g00673 700 Pfam Thioredoxin 604 686 IPR013766 -
Cpe02g00673 700 Gene3D Tetratricopeptide repeat domain 225 585 IPR011990 GO:0005515
Cpe02g00673 700 MobiDBLite consensus disorder prediction 202 237 - -
Cpe02g00673 700 SUPERFAMILY TPR-like 226 455 IPR011990 GO:0005515
Cpe02g00673 700 SUPERFAMILY Thioredoxin-like 502 692 IPR036249 -
Cpe02g00673 700 Gene3D Glutaredoxin 591 697 - -
Cpe02g00673 700 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 11 697 - -
Cpe02g00673 700 Pfam Tetratricopeptide repeat 501 532 IPR001440 GO:0005515
Cpe02g00673 700 Coils Coil 539 559 - -
Cpe02g00673 700 Pfam Tetratricopeptide repeat 421 452 IPR019734 GO:0005515
Cpe02g00673 700 ProSiteProfiles TPR repeat profile. 227 260 IPR019734 GO:0005515
Cpe02g00673 700 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 11 697 IPR044534 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00673 - - - csv:101208569 1211.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00673 Cpe06g00508 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00525 Cpe-Chr2:3109436 Cpe02g00673 Cpe-Chr2:4227564 2.77E-125 dispersed
Cpe02g00673 Cpe-Chr2:4227564 Cpe04g00785 Cpe-Chr4:7473551 0 dispersed
Cpe15g00839 Cpe-Chr15:8273098 Cpe02g00673 Cpe-Chr2:4227564 0 wgd
Cpe02g00673 Cpe-Chr2:4227564 Cpe06g00508 Cpe-Chr6:3027491 1.57E-127 wgd
Cpe02g00673 Cpe-Chr2:4227564 Cpe06g00649 Cpe-Chr6:4037845 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00673 Cpe_Chr02 FPKM 13.064538 13.350398 2.686703 2.849563 13.547715 13.276229 12.719954 1.818377 1.185475 1.494049