Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00675 ATGGATTTCGAGGATGATGGCTTTGAGGGTTCTGCGAATGAAGACATTATTTTTAAGGAGGTTTTCTTTGGGAATATCTCTAGCCACTCCAATAGATGTCCTTGCAAAGCATTTAGTAATAAACATGAGCCGTGGAAGATAAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCGACAGTGTCCAGTCATTCTTATTCAAGAAATATAAAGGTTGATGAATGCTACAATGCTACTGAGAATATTAGGACCGATTCTGTACCGTATAGTTTTCCATGCAAATGCCCTTCAGTGGAAGATAATTATGAGAATGCAAGTGCTAAGCGAATAAAACTTTCAACTGATGAACCTTCTGATTCTATACCCAATCTAGGTAAGGTTATGAACTCATCAGTAATTATAAGAGAATCTGCTTCTACATTCCACGTTGTAGAATCGTCTAGACAGGGTATTGTATCAAGTTGCTACCTGTTAAAGGATTTTGTAGAAAGGGACAGCAATCTGGGCGAACCTGATGTACCCAAATGCACGTCGTTGATTTTAGAAGGTCATGAACCCAATATGGAGAATAAAGTTAGTGCTTCGCCTGTTTCCGAAGAGAGCTCAATGACCAGACTCTTGGTAGCAAGTCCTTCCGATACATTCAACGAGAAGTTTGGATCTCCATTACATTTGGAGGTAGGACAAATGAAATTTCAATGTCCAGAACTGGACACTTCCTTGAAGACAGATTTGATAAGGGATCCCCGTCCTCTTCTCCACTATCATGTTGTTCACTTACTTATTGCAGCTGGATGGTCTATTGAAAGGCGCAAAAGACCTTGCAGGCGCTATTTGGAAACCGTTTATAGATCACCCCAGCGAAGGCTCTTTCGTGAATTTCCCAAAGCTTGGAGGGTTTGTGGTGAACTCCTATATGCTGATAGATGTAGTTTTGTAAAAGAATCTGACATCAAGGAATGGACCGGCATTCATCAATTCTTATTTGATCTTTGTGACACACTGTTACAAGTTGGGAAGGAAATGAATCAACTAGGAGCTTCAACGTCACTCGCTCATTGTTGGGTTATTCTAGATCCCTATGTTCAGGTTGTTTCGATTGACAGAAAGATTGGTACACTTAGGAAGGGAGAATTAGTTAGAGTTACCCGTAATATTAGGGTTATTGGGAACAATAAGACTGATAATTTTGTGACATTAACAAATGAGGATAGTATTTGTAACCTATCTGCTGACAAAAATGCACCTCCACTCCACGATCATTCACCGTCTGCCAAGAGTGCATTAACGGAGGCTGCATTGAAAGATCTCGATGGTGGCAATTGTGCTTCTGATGAGCAAACCTGTGATACAAGTTTATCTAATTACTATGGACATACAAAAGATGGAACAATGAAATTTCCGACAAGGGTGTCTAATTATGTCTCCGATGTAGGGGATGGTATGAATTGCTTGGTCAGTCATTGTAGTGCACTCAAACCTAGATGTCCGCCTCGTGGTCCTATTCTGTCTGGAAATTCAGATAATGTTATCCCAGTTTCTGGCCCTACATCTCCTTATGAGGACAGCGCTTTGTATAGCTCGGATGAACAGAGCTCTGAAAATCAAGTTGAAAAGCCTAATGAAATGGTGAAAAATGCACTGATGCATTCCCTGGGAGAAGGAAAAAAAGTGGAAGTCCCATTCAATGATAAGATGCAAAATAATCTGGAAGAATCTCTGTATTACTGTCCAAACTATATAAGCGATGATTTATCTCATTCTTGTGCTTCACAGGTTGTACAGAAGGTTACACATAATGAAGAAGGTGGGCAGCACGTTTCAACTTCAAAGTTCAAAACAGAGAGTAAAGTTTCTGCTGTACATTCTAATTTGCAGAAGAAAGGGCGTAGAAAGTGTAAAAAGATATCTGAAATTAATCCTACCTTGCCACCTCAGACCGATATTGACGTGAGTTGTTCTCAATTGGATATGATAGAATACCAGAAGTCCCATATAGCTGATACGAAAAACATGGACGGTGATGTGAAGTCCTTGTATCTCAGTCCTATTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAAAAAGATTTATGACAGTCTTAGAGGTTCAAAAACGAGAAAGAAGAAATTGAGCGAATGTCAAATTGAAGATGATGACCTATTAGTTTCAGCCATAATTAGAAACAAAGATGTCAGTTCGAGTGCTGCTGGATTTTCCGCTGTAAGGAAGTTCTTAAAGCCTAGAGCAAAAACGAACCGCAAAAGGCAAAAGAGTAGTTGTAAGCTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGGAAGTGGTATACCATTGGGGCTAGAACAATCTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGGCATGATCCAATATCGAAACTCTCGGGATAATAGTGTAGTTAAATATGGTAGAATTACTGGAGATGGCATCATCTGCAATTGCTGCAGTGAGCTACTCTCAATAACTGAATTTAAAAGGCACTCGGGTTCCAAATTTAATCGTCCTTGTTTGAATCTTTACTTGGACTCTGGGAAGCCTTTCATGTTATGTCAGCTTCAAGCCTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACAGTTCAAGTCGATGAAGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGGGGAGAGCTAATATGCTGTGATAATTGCCCCTCTACATACCATCATTCTTGTTTGTCAATTCTGGAGCTGCCTGAAGGCAACTGGTATTGCTCGAACTGTACTTGCCGAATATGTGCTGATCTGGTGAATTATAAAGAGTCGTCGAGTTCTTCTGATGCACTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGTGCGATGCCTGAAAGAAAAAGACATTGATTATGGAGCAGAGTCTCTTATTTGGTTTTGCAGTGAGAGTTGCCATAAGATTTACACAGGTCTTCAGTCTCAACTTGGGTCGATCAATCAGTTTGCTGACGGATTTTCTTGGATGCTTCTTCGATGTATTCATAGTGACCAGAAAATTCTATCGACCCCACGCTTAGCTATGATGGCAGAATGCAATTCCAGATTAGTAGTGGCTCTAACTATAATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATCTCGTGTACAGCTGGGAGTCGAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACTGTGATACTAGAGAAAGATGATGTGCTGCTCTGTGTAGCATCTATCAGGGTACATGGATCAGAAGTTGCTGAGATGCCCATCATTGCAACTTGTAGAACTCGTTCGGATGCTGATTCAAAACAACAATGTGTTTACTCCTGTCCTGATGAAGCACGTCCCAGAACGGAAATGAAACGTTTAAAAGATCAAGACTTGCATGAACACGATGAAAAGACGAAGAACGATCACGAGGGAAATCCAGCTCCAATTGATTCATCCACATTGCATTTGGTTGAATCAAATAGAATGGATACTTCAATTCAATCAGCACTACAATCTGATGGAAACTGTTGCACTGACGAAGTTCGAGCCACAACCCATGAGTCGAAAGAGTCGTTAGAACAGGACGTTGAGCATCCAGAAGGAAAGAGCTGGGATAACGAAGTTCACGTAGCTACAATGACGAGATTAGTCGAACCTTTTGTACTAACTTAG 3732 40.46 MDFEDDGFEGSANEDIIFKEVFFGNISSHSNRCPCKAFSNKHEPWKINDASLCSSSELSTVSSHSYSRNIKVDECYNATENIRTDSVPYSFPCKCPSVEDNYENASAKRIKLSTDEPSDSIPNLGKVMNSSVIIRESASTFHVVESSRQGIVSSCYLLKDFVERDSNLGEPDVPKCTSLILEGHEPNMENKVSASPVSEESSMTRLLVASPSDTFNEKFGSPLHLEVGQMKFQCPELDTSLKTDLIRDPRPLLHYHVVHLLIAAGWSIERRKRPCRRYLETVYRSPQRRLFREFPKAWRVCGELLYADRCSFVKESDIKEWTGIHQFLFDLCDTLLQVGKEMNQLGASTSLAHCWVILDPYVQVVSIDRKIGTLRKGELVRVTRNIRVIGNNKTDNFVTLTNEDSICNLSADKNAPPLHDHSPSAKSALTEAALKDLDGGNCASDEQTCDTSLSNYYGHTKDGTMKFPTRVSNYVSDVGDGMNCLVSHCSALKPRCPPRGPILSGNSDNVIPVSGPTSPYEDSALYSSDEQSSENQVEKPNEMVKNALMHSLGEGKKVEVPFNDKMQNNLEESLYYCPNYISDDLSHSCASQVVQKVTHNEEGGQHVSTSKFKTESKVSAVHSNLQKKGRRKCKKISEINPTLPPQTDIDVSCSQLDMIEYQKSHIADTKNMDGDVKSLYLSPISCHSERKGSKFKKIYDSLRGSKTRKKKLSECQIEDDDLLVSAIIRNKDVSSSAAGFSAVRKFLKPRAKTNRKRQKSSCKLLLRSLGNGEKNYKDGKWYTIGARTILSWLLDAGVISSNGMIQYRNSRDNSVVKYGRITGDGIICNCCSELLSITEFKRHSGSKFNRPCLNLYLDSGKPFMLCQLQAWSTEYKTRRSRTRTVQVDEDRNDDSCGICGDGGELICCDNCPSTYHHSCLSILELPEGNWYCSNCTCRICADLVNYKESSSSSDALKCSQCEQKYHVRCLKEKDIDYGAESLIWFCSESCHKIYTGLQSQLGSINQFADGFSWMLLRCIHSDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWESSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEVAEMPIIATCRTRSDADSKQQCVYSCPDEARPRTEMKRLKDQDLHEHDEKTKNDHEGNPAPIDSSTLHLVESNRMDTSIQSALQSDGNCCTDEVRATTHESKESLEQDVEHPEGKSWDNEVHVATMTRLVEPFVLT 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4246389 4255951 - Cp4.1LG02g01870.1 Cpe02g00675 464624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00675 1243 SMART PHD_3 895 936 IPR001965 -
Cpe02g00675 1243 SMART PHD_3 937 990 IPR001965 -
Cpe02g00675 1243 MobiDBLite consensus disorder prediction 1141 1164 - -
Cpe02g00675 1243 MobiDBLite consensus disorder prediction 1141 1171 - -
Cpe02g00675 1243 MobiDBLite consensus disorder prediction 503 537 - -
Cpe02g00675 1243 Pfam PHD-finger 896 937 IPR019787 -
Cpe02g00675 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 886 937 IPR013083 -
Cpe02g00675 1243 ProSiteProfiles Zinc finger PHD-type profile. 893 938 IPR019787 -
Cpe02g00675 1243 PANTHER PHD FINGER FAMILY PROTEIN 2 1119 - -
Cpe02g00675 1243 MobiDBLite consensus disorder prediction 1201 1222 - -
Cpe02g00675 1243 MobiDBLite consensus disorder prediction 507 537 - -
Cpe02g00675 1243 Pfam Tify domain binding domain 819 869 IPR032308 -
Cpe02g00675 1243 SUPERFAMILY FYVE/PHD zinc finger 877 937 IPR011011 -
Cpe02g00675 1243 CDD PHD2_CHD_II 895 935 - -
Cpe02g00675 1243 PANTHER INCREASED DNA METHYLATION 1 2 1119 IPR031086 -
Cpe02g00675 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 938 993 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00675 - - - bhj:120086236 1776.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00675 Cpe-Chr2:4246389 Cpe17g00858 Cpe-Chr17:6657260 4.28E-90 dispersed
Cpe05g00434 Cpe-Chr5:2481787 Cpe02g00675 Cpe-Chr2:4246389 1.27E-10 dispersed
Cpe02g00675 Cpe-Chr2:4246389 Cpe06g00647 Cpe-Chr6:4011111 1.29E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49021 PF16135 TDBD 7.70E-16 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00675 Cpe_Chr02 FPKM 25.58198 25.450068 3.893183 5.080341 5.220726 5.031087 4.567462 4.892331 5.368415 6.04781