Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00684 ATGCTTACGACTGATCGTCTTCAACAATTTCAAAACGTCTCTCTGTGTTTCTCTTATGCCTTGGAGCTCCAATTCCCGATCCATTTTCAGACCCCTTCAATTCCAACCACAACCACAGTCATCCGATCCCACCTGAAGAAGCAAACTATGGCTGCGTATAGAACGGACGACGATTACGATTACCTCTTCAAAGTGGTTCTCATCGGTGACTCTGGTGTGGGCAAATCCAATCTACTCTCCAGGTTTACGCGCAATGAGTTCAGTCTCGAGTCCAAATCCACAATCGGCGTCGAATTCGCCACTCGGAGTATTCGAGTCGATGATAAGATTGTCAAGGCTCAGATTTGGGACACCGCCGGTCAAGAAAGATACCGTGCAATCACAAGTGCATACTATCGAGGAGCAGTTGGTGCATTGCTTGTTTATGATGTCACACGACACGTGACGTTCGAAAACGTTGAGAGATGGTTGAAAGAACTCAGGGATCACACAGATTCCAATATAGTGATAATGCTAGTTGGTAACAAGGCAGACTTGCGACATCTTCGTGCTGTTTCGACTGAAGATGCCTCGGCCTTTGCAGAGAAGGAGAACACTTTCTTCATGGAGACATCTGCCCTCGAGTCTCTGAATGTCGAGAGTGCTTTTACCGAAGTGCTAACCCAAATCTATCGTGTAGTTTGCCGAAAAGCGCTCGAGATTGGGGAGGATGCCACAACATTACCTAAAGGACAAACCATTAACGTTGGAAACAAGGATGATGTTTCGGCAGTGAAGAAAGTTGGTTGCTGCTCTTCATGA 801 46.44 MLTTDRLQQFQNVSLCFSYALELQFPIHFQTPSIPTTTTVIRSHLKKQTMAAYRTDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDASAFAEKENTFFMETSALESLNVESAFTEVLTQIYRVVCRKALEIGEDATTLPKGQTINVGNKDDVSAVKKVGCCSS 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4312688 4314570 + Cp4.1LG02g01930.1 Cpe02g00684 464633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00684 266 CDD Rab11_like 60 224 - -
Cpe02g00684 266 ProSiteProfiles small GTPase Rab1 family profile. 58 264 - -
Cpe02g00684 266 SMART ran_sub_2 68 257 - -
Cpe02g00684 266 SMART rho_sub_3 65 222 IPR001806 GO:0003924|GO:0005525
Cpe02g00684 266 PRINTS Transforming protein P21 ras signature 63 84 - -
Cpe02g00684 266 PRINTS Transforming protein P21 ras signature 86 102 - -
Cpe02g00684 266 PRINTS Transforming protein P21 ras signature 104 126 - -
Cpe02g00684 266 PRINTS Transforming protein P21 ras signature 166 179 - -
Cpe02g00684 266 PRINTS Transforming protein P21 ras signature 201 223 - -
Cpe02g00684 266 ProSiteProfiles small GTPase Ras family profile. 48 266 IPR001806 GO:0003924|GO:0005525
Cpe02g00684 266 SMART ras_sub_4 60 226 - -
Cpe02g00684 266 Pfam Ras family 64 224 IPR001806 GO:0003924|GO:0005525
Cpe02g00684 266 Gene3D - 55 264 IPR027417 -
Cpe02g00684 266 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 50 264 - -
Cpe02g00684 266 SMART rab_sub_5 63 226 - -
Cpe02g00684 266 TIGRFAM small_GTP: small GTP-binding protein domain 61 219 IPR005225 GO:0005525
Cpe02g00684 266 ProSiteProfiles small GTPase Rho family profile. 56 228 - -
Cpe02g00684 266 PANTHER DRAB11-RELATED 50 264 - -
Cpe02g00684 266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 230 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00684 K07904 RAB11A; Ras-related protein Rab-11A - csv:101210695 417.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00684 Cpe06g00664 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00684 Cpe-Chr2:4312688 Cpe05g01421 Cpe-Chr5:9953050 2.36E-144 dispersed
Cpe04g01374 Cpe-Chr4:11157112 Cpe02g00684 Cpe-Chr2:4312688 1.58E-83 dispersed
Cpe15g00821 Cpe-Chr15:8163079 Cpe02g00684 Cpe-Chr2:4312688 2.10E-117 wgd
Cpe02g00684 Cpe-Chr2:4312688 Cpe06g00664 Cpe-Chr6:4137002 1.24E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g151 . . . . . . . . . . Cma01g01232 Cma09g00833 Car01g01053 Car09g00748 . Cpe06g00664 Cpe02g00684 Bhi09g03479 . . . Hepe01g1418 Mch11g1033 . Cla11g01728 Cam11g1798 Cec11g1819 Cco11g1825 Clacu11g1957 Cmu11g1767 Cre11g2175 . Cone10ag1362 . . Lsi04g02036 Csa04g02308 Chy07g00044 Cme07g00557 . . . . . . . . . Cmo01g01285 Cmo09g00827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00684 Cpe_Chr02 FPKM 22.743271 23.448135 23.415928 20.891718 16.109585 14.768735 17.045813 25.417311 26.333624 24.56876