Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00692 ATGGGAAGGGTTTTTGTTGTGGAAAAGGAAGGGCGATCGTACAGATGCAAGTTCTGCAATACACAGTTAGCTCTCGCTGATGACCTTGCATCTCGGACCTTTCATTGCCGCCGGGGAAAAGCTTACCTCTTCAATCATGTGATGAACATTTCTTCCGGAGCATTGGAAGAGAGGATGATGCTCTCAGGACTACATACAGTAGCTGACATATTTTGTTGCACATGTGGCCAAATTGTCGGGTGGAAATATGACGCAGCACATGAGAAGAGCCAGAAATACAAGGAGGGCAAGTTTGTTCTTGAAAGGGGGAGGATCGTCGATGACACATTGAATTTTCGACTTAGTATCAGTGATAGCGATGATAATTAG 369 44.99 MGRVFVVEKEGRSYRCKFCNTQLALADDLASRTFHCRRGKAYLFNHVMNISSGALEERMMLSGLHTVADIFCCTCGQIVGWKYDAAHEKSQKYKEGKFVLERGRIVDDTLNFRLSISDSDDN 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4360127 4362844 + Cp4.1LG02g01810.1 Cpe02g00692 464641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00692 122 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Cpe02g00692 122 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 109 IPR039058 -
Cpe02g00692 122 PANTHER BNAA02G09980D PROTEIN 1 109 - -
Cpe02g00692 122 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 14 106 IPR004910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00692 - - - cmos:111446692 253.447
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00692 Cpe06g00674 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01045 Cpe-Chr1:6184131 Cpe02g00692 Cpe-Chr2:4360127 1.34E-51 dispersed
Cpe01g02518 Cpe-Chr1:20662067 Cpe02g00692 Cpe-Chr2:4360127 3.70E-46 dispersed
Cpe02g00692 Cpe-Chr2:4360127 Cpe05g00587 Cpe-Chr5:3556967 2.41E-35 dispersed
Cpe10g00946 Cpe-Chr10:5305478 Cpe02g00692 Cpe-Chr2:4360127 5.85E-25 dispersed
Cpe02g00692 Cpe-Chr2:4360127 Cpe20g00447 Cpe-Chr20:2566478 5.71E-57 wgd
Cpe02g00692 Cpe-Chr2:4360127 Cpe06g00674 Cpe-Chr6:4182472 1.42E-67 wgd
Cpe02g00692 Cpe-Chr2:4360127 Cpe09g00828 Cpe-Chr9:7643499 8.63E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g185 . . . . . . . . . . Cma01g01220 . Car01g01043 Car09g00760 Sed04g2416 Cpe06g00674 Cpe02g00692 Bhi09g03456 Tan01g4371 Cmetu07g1273 . Hepe01g1404 Mch11g1047 . Cla11g01741 . Cec11g1830 . Clacu11g1970 Cmu11g1780 Cre11g2186 . Cone9ag0190 . . Lsi04g02051 Csa04g02323 . Cme07g00575 . . . . . . . . . Cmo01g01274 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000236 2 9 4 4 3 3 7 3 3 4 6 3 6 4 5 7 2 5 7 4 5 4 5 3 5 3 5 13 16 4 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00692 Cpe_Chr02 FPKM 6.854871 7.365156 2.646051 1.485835 13.539671 9.77026 9.788213 0.0 0.0 0.0