Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00695 ATGTCTGACGTAGCGAGTATAGCAGAGGCGGTCGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTATACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTCGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTATATTACTGAGTATTATGGTTCTTATCTCCACCAGACGAAGTTATGGATAATAATGGAATATATGGCTGGGGGCTCTGTTGCAGATCTGCTGCAAACCGGGCCACCCCTTGATGAAATGTCAATGGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATCCACAGGGACATTAAAGGAACTCCATTCTGGATGGCGCCAGAGGTTATTCAGAATTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGCGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAACACCTGCTGAGAGGCCCAGTGCCAAAGAGCTTCTGAAGCATCGGTTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCAAAGTACCAAATAAAGGAAGATGTAGAGACACCAACTAATGGTCCTAGAGGTATGGATGAAATGGACACGGTGAAAGTATCAAGAAATTTAAGAGAAGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCTAAGAATGCGGGATGGGACTTTAGCATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAAAACCACCTCAAGTTGGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCGCCTAGTAGAGTTGCAGAGAGCGGTAACTGGCTAGCTGCATCTGGAAATGCACCACGTGACATAGCAGAAAGCACTAGAGATTCATACAATACCGGGAATGCTAGTGAAGATTCTGGAAGTGCACAAGCATGTTTTGAGGACACATCCCTTAGTGGTACTATTGTTATGCGTGGTGAACGTGATGATTCTGATTCTCCTCGGACTCCTAAATCCAGATTGGGAATTCAAGAAAAAACTTCAAGTTTGTCTCCTGAAGATAGTGCATTTAACCTTGCGGAGGCAAAGGCTGCAATTCAAGCAGCAGGATTGAAGAGAGCTAATGCAAGGGAAAGATCAGCTCGCCCTATACACAGCGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCATGAATTCTTCGATGCACCAAGAGCATTGCCAAAACCTTCTTTATCAAGTGATAATGAAGAATTTGCAAAAATAGCCTCGGGTTCTGCACCTTTATCGATGTTGTTTATGCCATCCTTGAAAGAGAGTGATAACCAACGTGCACAATTCAACGACATTTATTTTCTGAGTACAAATGTGCTGAAAAGTGTAACCTCCTCTTACATGTCATCTCAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGCACTGTAATTAATGCACTTATAAATATGGAACGCGTAAAACCTGGATCATGTGAAGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCTGAGGAATCTTCACTGAAAAATTTACAAGACTTGGCCACTCGCTTATTCAACAAGGCAAAGACAGTTCCTGAAGATACACAAGATGTCGCCGATTCTGATAGCAGCAAAAAGCAATCGAACAAGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTATCAAGGGATCTGAGTCCAGCTTGA 1977 42.79 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQTGPPLDEMSMACILRDLLHAIDYLHSEGKIHRDIKGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKTPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEDVETPTNGPRGMDEMDTVKVSRNLREETVRASNQSKTPKNAGWDFSIGGPHSTGTVRSVKPPQVGERKPEIPYGQAAPSRVAESGNWLAASGNAPRDIAESTRDSYNTGNASEDSGSAQACFEDTSLSGTIVMRGERDDSDSPRTPKSRLGIQEKTSSLSPEDSAFNLAEAKAAIQAAGLKRANARERSARPIHSDRKENRRTEQTVSSSDSSRHSHEFFDAPRALPKPSLSSDNEEFAKIASGSAPLSMLFMPSLKESDNQRAQFNDIYFLSTNVLKSVTSSYMSSQVVADDSEGSPSRTVINALINMERVKPGSCEVLVTKLLQKLASSEESSLKNLQDLATRLFNKAKTVPEDTQDVADSDSSKKQSNKELHSNSNLSSLARFLLSRWQGQVSRDLSPA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4370141 4386631 - Cp4.1LG02g01760.1 Cpe02g00695 464644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00695 658 SUPERFAMILY Protein kinase-like (PK-like) 13 288 IPR011009 -
Cpe02g00695 658 MobiDBLite consensus disorder prediction 354 382 - -
Cpe02g00695 658 MobiDBLite consensus disorder prediction 347 418 - -
Cpe02g00695 658 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 543 656 - -
Cpe02g00695 658 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 138 - -
Cpe02g00695 658 MobiDBLite consensus disorder prediction 402 418 - -
Cpe02g00695 658 MobiDBLite consensus disorder prediction 283 297 - -
Cpe02g00695 658 MobiDBLite consensus disorder prediction 440 461 - -
Cpe02g00695 658 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 139 373 - -
Cpe02g00695 658 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 369 515 - -
Cpe02g00695 658 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 139 373 - -
Cpe02g00695 658 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 369 515 - -
Cpe02g00695 658 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 543 656 - -
Cpe02g00695 658 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 138 - -
Cpe02g00695 658 MobiDBLite consensus disorder prediction 611 627 - -
Cpe02g00695 658 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cpe02g00695 658 Pfam Protein kinase domain 139 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00695 658 Pfam Protein kinase domain 16 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00695 658 ProSiteProfiles Protein kinase domain profile. 15 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00695 658 MobiDBLite consensus disorder prediction 282 335 - -
Cpe02g00695 658 MobiDBLite consensus disorder prediction 610 632 - -
Cpe02g00695 658 Gene3D Transferase(Phosphotransferase) domain 1 139 266 - -
Cpe02g00695 658 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cpe02g00695 658 Gene3D Transferase(Phosphotransferase) domain 1 91 138 - -
Cpe02g00695 658 MobiDBLite consensus disorder prediction 435 489 - -
Cpe02g00695 658 Coils Coil 424 444 - -
Cpe02g00695 658 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00695 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1020.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00695 Cpe06g00678 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00695 Cpe-Chr2:4370141 Cpe09g00224 Cpe-Chr9:1284728 1.80E-59 dispersed
Cpe02g00695 Cpe-Chr2:4370141 Cpe06g00678 Cpe-Chr6:4198781 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g00678 CST 1 711 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 1.4e-213 740.0
Cpe02g00695 CST 1 656 MAP Kinase Kinase Kinase Kinase AT1G53165 53.8 6.5e-187 651.4
Cpe06g00678 CST 1 710 MAP Kinase Kinase Kinase Kinase AT3G15220 60.9 2.0e-220 762.7
Cpe02g00695 CST 1 655 MAP Kinase Kinase Kinase Kinase AT3G15220 55.3 3.4e-191 665.6
Cpe09g00224 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.4e-67 255.0
Cpe09g00224 . 4 857 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 9.2e-241 830.5
Cpe06g00678 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 9.4e-68 255.8
Cpe13g00900 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 59.7 2.9e-216 748.8
Cpe01g02349 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 58.0 6.3e-211 731.1
Cpe08g00913 CCT 7 745 MAP Kinase Kinase Kinase Kinase AT4G24100 62.3 2.4e-240 828.9
Cpe14g01014 CCT 7 844 MAP Kinase Kinase Kinase Kinase AT4G24100 51.9 1.2e-210 730.3
Cpe08g00913 CCT 11 746 MAP Kinase Kinase Kinase Kinase AT4G10730 62.0 4.8e-238 821.2
Cpe14g01014 CCT 11 844 MAP Kinase Kinase Kinase Kinase AT4G10730 52.4 6.3e-214 741.1
Cpe08g00913 CCT 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.4e-116 417.5
Cpe14g01014 CCT 226 507 MAP Kinase Kinase Kinase Kinase AT1G70430 59.4 1.0e-95 348.2
Cpe13g00900 CCT,ECH 1 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 6.4e-80 295.4
Cpe01g02349 CCT,ECH 6 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 3.0e-77 286.6
Cpe08g00913 CCT 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.9e-74 275.0
Cpe03g01498 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.8e-144 509.2
Cpe13g00900 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 8.7e-69 258.5
Cpe01g02349 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 1.4e-66 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62217 PF00069 Pkinase 6.00E-30 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00695 Cpe_Chr02 FPKM 3.448529 3.573438 3.781555 3.884471 5.544917 4.660959 5.583344 4.369399 4.201096 4.321102