Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00700 ATGGCTTCCTCCAATTCCTTCTTCACCACGCCGACCAAAACCCCTTCAGAAAAGTCCTCCAGAAAGACTCAAAACTCCACCCGGATGGACGCGTCCGAGTCCAGATCCCGATTTGAAGCCTACAATCGTCTTCAGGCGGCGGCTGTGGCGTTTGGCGAAAAGCTTCCGATTCCTGAGATCGTTGCCTTGGGTGGCCAATCCGACGGCAAGAGCTCTCTCTTAGAAGCCCTACTTGGATTCCGCTTCAATGTCCGCGAAGTCGAAATGGGGACACGCAGGCCTTTGATCCTCCAAATGGTCCATGATCCGACTGCTCTCGAGCCCCGTTGCCGATTTCAGGACGAAGATTCTGAAGAATATGGAAATCCTGTTGTTTTAGCATCTGCAATTGCAGACATTATCAAGTCTCGAACTGAGGCGCTGTTGAAGAAGACCAAAACTGCAGTTTCTTCCATCCCTATTGTGATGAGAGCAGAGTATGCACATTGCCCCAACCTTACCATTATTGACACCCCTGGCTTTGTTCTTAAGGCAAGGAAGGGAGAGCCAGAGAACACACCACAAGAAATTCTTTCAATGGTGAAGTCACTTGCAAGTCCTCCCCATCGTATCCTCTTGTTCCTTCAACAAAGTAGTGTAGAGTGGTGTTCTTCATTGTGGTTGGATTCAATTCGTGAAATTGATCCCGCATTCAGACGGACTATTGTTGTTGTCTCCAAATTTGATAATCGTCTTAAGGAATTCGGTGACCGATGGGAAGTGGATAAGTATTTGAGTGCCAGTGGTTACCTTGGAGATAACACTCATCCATTTTTTGTGGCCCTGCCAAAGGACAGAAATACTGTTTCTAATGATGAATTTCGGCGACAAATATCTCAAGTGGATTCTGAAGTTCTTCGTCATCTACGTGATGGTGTCAAGGGAGGGTTCGATGAAGAGAAATTTAGATCTCACATTGGTTTTGGCTGCCTGAGGGAATATCTAGAATCCGAGCTTCAGAAGAGATACAAGGAAGCTGCTCCAGCAACTTTGGCTTTGCTAGAGCAACGTTGTGGTGAAGTTGCATCTGAACTATGTAGAATGGAGTCTAAAATACAAGCTACTTCAGATATTGCACATCTTAGGAAATATGCTATGCTGTATACAGCTTCTATCAGCAATCATGTGAGCGCATTGATTGAAGGTGCGGCAGATCCTGCACCAGAGCAATGGGGGAAAACTACTATGGAGGAACAGTCGGGAAGTGGCATTGGAAGTTGGCCTGGTGTTACATCAGAGGTCAAGCCTGCCAACTCCAGCCTTCGGTTGTATGGTGGGGCTGCTTTTGAACGAGTAGCAAACATATTACTCGCTCATACTGGCAAACGTGGAGGCAGGGGATTAACAGAAGCAGCTGCAGAGATTGCCCGTGCTGCTGCACGATCATGGCTTGCTCCTCTTCTAGATACTGCTTGTGATCGTCTTGCTTTTGTACTGGAAAATCTTTTTGATCTTGCACTGGAAAGAAATCGTGCCTATGAATCACAAAATGGGAAGAAGCACTGTAGCATGGACGGGTATGTTGGTTTTCACGCTGCTTTAAGGCATGCTTACAATCGTTTTCTGAAGGATCTTGCTAAACAATGCAAGCAACTGCTTCGTCACCACCTCGACTCTGTTACAAGCCCATATTCACTTGTTTGCTACGAGAATGATTTTGAAGGAGGCTCTCTCTCAAATGCATCATCTTTTCAGAAAATTAATCGGGCTTCTGCTGGTTTGTTTTCCTTTGAATTATCTGAATGTGGGACAGATTCTCATGACGAAACAATAAAGGATCAGGAAAACAGACCTCCAGAAAAAAACGTACAGCAGATAACACCAGGAAAAGGTAAAGAATCTAGAGAAGCCCTTCGAGAATGCCAAATGACTGTTCCTGAAACTCCTTCACCAGAGCAACCTAGTGATGTTGGGTACGCAGTAAAGAAGGAATTTGTGAATGGGATGGATATTGGAGTTCGAAAAAGGGTTTCAAGAGTGACCAGAAATTCTAGTCGGATCGGTGGTCAAGATGGCGGCGGAACTTTGTTTGGTAATGATGATGGCAGTTCCAGATGTAGCTCAGCTTACACAGAAATTTGCTCATCGGCAGCGCAACATTTTGCTAGGATTCGTGAAGTTCTCATTGAGCGAAGTGTGATGTCTACACTGAATTCTGGATTCTTAACACCTTGTCGAGAAAAACTTGTAGTGGCACTTTGTTTGGAATTATTTGCCGTGAATGACGAGAAGTTCACAGACATGTTCGTAGCTCCAGGTGCTATTGAGCTCAATCACTTTGTTGATACTTCAATGAACTTGGAGGAATATCAAACAATCCAAGCGTATTCTCTTCTCGAGCTCAATCACTCTGTTGGCTCACCTAACCTGCATCAAGGTATGAACTCCCTGATTTCACTTATGAAAGCATCAAAGGTTTCTGGTCATTGA 2469 45.0 MASSNSFFTTPTKTPSEKSSRKTQNSTRMDASESRSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALEPRCRFQDEDSEEYGNPVVLASAIADIIKSRTEALLKKTKTAVSSIPIVMRAEYAHCPNLTIIDTPGFVLKARKGEPENTPQEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDSIREIDPAFRRTIVVVSKFDNRLKEFGDRWEVDKYLSASGYLGDNTHPFFVALPKDRNTVSNDEFRRQISQVDSEVLRHLRDGVKGGFDEEKFRSHIGFGCLREYLESELQKRYKEAAPATLALLEQRCGEVASELCRMESKIQATSDIAHLRKYAMLYTASISNHVSALIEGAADPAPEQWGKTTMEEQSGSGIGSWPGVTSEVKPANSSLRLYGGAAFERVANILLAHTGKRGGRGLTEAAAEIARAAARSWLAPLLDTACDRLAFVLENLFDLALERNRAYESQNGKKHCSMDGYVGFHAALRHAYNRFLKDLAKQCKQLLRHHLDSVTSPYSLVCYENDFEGGSLSNASSFQKINRASAGLFSFELSECGTDSHDETIKDQENRPPEKNVQQITPGKGKESREALRECQMTVPETPSPEQPSDVGYAVKKEFVNGMDIGVRKRVSRVTRNSSRIGGQDGGGTLFGNDDGSSRCSSAYTEICSSAAQHFARIREVLIERSVMSTLNSGFLTPCREKLVVALCLELFAVNDEKFTDMFVAPGAIELNHFVDTSMNLEEYQTIQAYSLLELNHSVGSPNLHQGMNSLISLMKASKVSGH 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4421614 4426471 - Cp4.1LG02g01720.1 Cpe02g00700 464649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00700 822 MobiDBLite consensus disorder prediction 1 35 - -
Cpe02g00700 822 SMART dynamin_3 34 268 IPR001401 GO:0003924|GO:0005525
Cpe02g00700 822 MobiDBLite consensus disorder prediction 598 627 - -
Cpe02g00700 822 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 54 341 IPR030381 GO:0005525
Cpe02g00700 822 PRINTS Dynamin signature 57 75 IPR022812 -
Cpe02g00700 822 PRINTS Dynamin signature 160 177 IPR022812 -
Cpe02g00700 822 PRINTS Dynamin signature 229 245 IPR022812 -
Cpe02g00700 822 PRINTS Dynamin signature 82 99 IPR022812 -
Cpe02g00700 822 MobiDBLite consensus disorder prediction 1 31 - -
Cpe02g00700 822 MobiDBLite consensus disorder prediction 598 612 - -
Cpe02g00700 822 Gene3D - 25 394 IPR027417 -
Cpe02g00700 822 PANTHER DYNAMIN-LIKE PROTEIN C 34 769 - -
Cpe02g00700 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 349 IPR027417 -
Cpe02g00700 822 Pfam Dynamin family 60 240 IPR045063 -
Cpe02g00700 822 CDD DLP_1 55 341 IPR001401 GO:0003924|GO:0005525
Cpe02g00700 822 PANTHER DYNAMIN 34 769 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00700 - - - bhj:120085297 1389.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00700 Cpe-Chr2:4421614 Cpe04g00401 Cpe-Chr4:4650957 2.99E-49 dispersed
Cpe02g00700 Cpe-Chr2:4421614 Cpe14g00456 Cpe-Chr14:2864059 1.15E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g204 . Blo03g01548 . . . Bpe08g01021 . . . . . . . . Sed06g0329 . Cpe02g00700 Bhi09g03433 Tan01g4390 Cmetu01g0301 . Hepe01g1389 Mch11g1066 . Cla11g01759 Cam11g1826 Cec11g1846 Cco11g1853 Clacu11g1986 . Cre11g2203 Cone6ag0150 Cone9ag0176 . . Lsi04g02069 Csa04g02340 Chy07g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00700 Cpe_Chr02 FPKM 14.12844 13.754691 5.189825 2.895909 2.289293 2.667062 2.722734 6.237617 6.036154 5.959407