Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00702 ATGTGTGTGTATTTGTTTATATGGAGCTTTAAGTGGATAACAATGGAGGCATCATTTGATCACCTTAAGAACCAGGATGATTTATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCCTTCTCTTAAATGGAGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCAGAAAGATCTGTGGATGCTTTAGAGTGCCTTCATATATTTAGCCAAATAGTGGAGATTGTTAACATTGCTCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCATGCTTTGTTATGTCCTCTTTCAACCATGTAACCTTTATTGAGTCGGCATCGTGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTCAATGGTCAAACTGTAGAGGTTATAAAAGCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTTCGATCTATTATGACCCCGATAAATGCTTTGTCGGAAACTAGTTGTATGCAGTCGAGTTCAGTGTATGCAGCTCAAATATCATTGAATGAAGGGTCTGGAGAATGTAGAAAAATGGATGGACGACATGTCGAAGAAGCTGAAGATAAGATGCAATCGTTTCCAATGAAACAGATATTAGCCATGGAGACTACTTGGTACTCTAGCCCGGAAGAGGCGTCTGGTGGTCCAAGTTCCAGTGCTTCAGATATCTACCGGTTAGGTGCTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAAAAGAGTAGAACTATGTCGAGCTTGAGGCATCGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCCGAGCCAAGTAATCGACCTAAGCTAAGTGATATATTGCAGAGTGAATTTCTCAATGAGCCAAGAGATGACCTTGAAGAACGTGAAGCAGCAATCGAGCTTAGGAAAAGAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTTCTCATAAGTTGCAAGATACTATTTCTTTTCTTCGCAGTGATATCGAACAAGTTATGATGCACCAAACTAATTTTAAAAGAAAAAGTAGGTCATGCCCAGATCTCGAAAAGGACAATCATTTGCCTTTAAATCTCTCTTCAACGACTCGCGTTGAAAATACTGATTCTGCTGGCTTGGGATCAAGGAAACGATTTAGGCCAGGAATTTTGATACCCGATTTAGAAGTATGTGGTGATAATCTTGATGACGATCAAAACGAACAAGGTGTACTTTTTAAGTATTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTAGCTTATTTTTTGATGAGAGGTAGAGTAAACAAGCCGTCAAGGAGGCAGTTCGTTAAACACTCATCGATAAGTAGCGAAGGTAGAGGGTCCATTGTTTTGAATGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATAGACAAGGTGGATGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAGGTCAAGGCAGACTTGAAACAAGGAGATCTATTGAATTCCTCCAATCTAGTATGTTCTCTCGGTTTTGACCGTGATGGAGAATTCTTTGCCACGGCTGGTGTTAATAGGAAAATCAAAGTGTTTGGATACGAATCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAAGTCGAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCTAGTAATTTCGAGGGTGTAGTGCAGGTATGGGATGTCACAAGAAGTCAAGTAGTCACTGAAATGGAAGAACACGAGAGGCGCGTATGGTCGATTGACTTCTCATCGGCCGATCCAACAATTTTGGCTAGCGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGCAATTCTACTTTTGCACTTGGGTATGAGTATCGGCACGATCAGAACAAAAGCCAATGTCTGCTGCGTACAATTTCCTGTGGATTCTGGTCGGTCCCTTGCGTTCGGTTCAGCCGATCACAAAATTTATTACTACGACATGCGGAATATTAGAGTTCCTTTGTGCACCTTCACTGGACACAGCAAAACTGTGAGTTACGTCAAGTATATAGATTCGAGCACTCTTGTTTCTGCATCCACTGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCTCGTCCCGGGTTATTGATTCTCCAGTTCAGTCCTTCACGGGCCACATGAATGTGAAGGTCTTCATCTACCACAAAGCCTTTCCAATGCCAGCATTGTCATACAAGTTCGAAATCGATCCTCTTTCCAGTCATGAAATGGACGCCGCCGCTCAATTCATCTCGTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTTGCTGCAAACTCAACTGGGCATATCAAAATTCTGGAAATGGTTTAG 2496 41.87 MCVYLFIWSFKWITMEASFDHLKNQDDLSGVCEEDILADPYVPSLKWSDISLRQWLDKPERSVDALECLHIFSQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNGQTVEVIKASSPFPSSLGSEGFRSIMTPINALSETSCMQSSSVYAAQISLNEGSGECRKMDGRHVEEAEDKMQSFPMKQILAMETTWYSSPEEASGGPSSSASDIYRLGALLFELFCSFSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSNRPKLSDILQSEFLNEPRDDLEEREAAIELRKRIEEQELLLEFLLLMQQRKQEASHKLQDTISFLRSDIEQVMMHQTNFKRKSRSCPDLEKDNHLPLNLSSTTRVENTDSAGLGSRKRFRPGILIPDLEVCGDNLDDDQNEQGVLFKYSRLMKNFKKLELAYFLMRGRVNKPSRRQFVKHSSISSEGRGSIVLNERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLGFDRDGEFFATAGVNRKIKVFGYESIVNEDRDIHYPVVEMASKSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMEEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQAILLLHLGMSIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHSKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCSSRVIDSPVQSFTGHMNVKVFIYHKAFPMPALSYKFEIDPLSSHEMDAAAQFISSVCWRGQSSSLVAANSTGHIKILEMV 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4434128 4440665 - Cp4.1LG02g01590.1 Cpe02g00702 464651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00702 831 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00702 831 SUPERFAMILY Protein kinase-like (PK-like) 49 311 IPR011009 -
Cpe02g00702 831 SUPERFAMILY WD40 repeat-like 532 828 IPR036322 GO:0005515
Cpe02g00702 831 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Cpe02g00702 831 PRINTS G protein beta WD-40 repeat signature 734 748 IPR020472 -
Cpe02g00702 831 PRINTS G protein beta WD-40 repeat signature 643 657 IPR020472 -
Cpe02g00702 831 Pfam WD domain, G-beta repeat 620 656 IPR001680 GO:0005515
Cpe02g00702 831 Pfam WD domain, G-beta repeat 712 747 IPR001680 GO:0005515
Cpe02g00702 831 ProSitePatterns Trp-Asp (WD) repeats signature. 734 748 IPR019775 -
Cpe02g00702 831 Gene3D Transferase(Phosphotransferase) domain 1 48 310 - -
Cpe02g00702 831 Gene3D - 509 831 IPR015943 GO:0005515
Cpe02g00702 831 Coils Coil 305 325 - -
Cpe02g00702 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 658 IPR001680 GO:0005515
Cpe02g00702 831 PANTHER PROTEIN SPA1-RELATED 3 15 831 - -
Cpe02g00702 831 SMART WD40_4 616 656 IPR001680 GO:0005515
Cpe02g00702 831 SMART WD40_4 790 829 IPR001680 GO:0005515
Cpe02g00702 831 SMART WD40_4 574 613 IPR001680 GO:0005515
Cpe02g00702 831 SMART WD40_4 528 563 IPR001680 GO:0005515
Cpe02g00702 831 SMART WD40_4 666 705 IPR001680 GO:0005515
Cpe02g00702 831 SMART WD40_4 709 747 IPR001680 GO:0005515
Cpe02g00702 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 716 749 - -
Cpe02g00702 831 PANTHER PROTEIN SPA1-RELATED 2 15 831 IPR044630 GO:0009640
Cpe02g00702 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 716 749 IPR001680 GO:0005515
Cpe02g00702 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00702 - - - mcha:111010399 1442.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00702 Cpe06g00688 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00702 Cpe-Chr2:4434128 Cpe13g00119 Cpe-Chr13:841312 1.58E-166 dispersed
Cpe02g00702 Cpe-Chr2:4434128 Cpe06g00688 Cpe-Chr6:4281224 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00702 Cpe_Chr02 FPKM 3.198625 3.957952 2.581464 2.689883 2.72603 2.894144 2.871027 3.767241 4.676864 4.588194