Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00703 ATGTCTTTCTTTTCCTGCCACCCCGTCCCACTCCAGATTATTTCACTTAACGTTGAGGTGATTGATCTTGACGACGATGAAGCTTCTGATGCTGATATGGCCATGTTTCTTCAGGACAATTTTGACGCAAATAACAAAGGAAAGGGTTTATATCACCATAGTGATCATCAATTGAAGAAAACATCGTCTAGCCGTTCATTTATTCCAGATGTGGAAGTCATAGAGAGTACAAACAAAGATGAATCTAACTTACCCTCAGCATCACATAACTTCATTGATCTAGACAATTATTGCTCCGAGTCATCGGCTGAAGACGACGAGTGGATTCCTTTTGATGAGGTTATGGATGTGGATGCATATTCAGCTCTACAAGCTCATTTTGATCATATGGATATTCCTTCTGATATTGAAGTTCCCATACCTTGGCTTCCTCATGGTCAAAAGGGAAACCAGACAAACATTGAAACTAGTTCATTATTAGCAGAACCCCAAATCAAACCAGACGCTGTTAATCAGCTAGGAAGAGCATCTGCTCTGTTGAAGTTGAAGGCAGCTTTAGCAAATAGCCTAAGCTTGCCGGCTGATATTGATGTTCTGAGTCATCTTCATGAAAGTTTTGAGCCTTTTCCTTCATTTTCTTCACAAGATACTCAACCAAATAAGAAAACGACTGCATCCCAATACAGGGACAAATCAGTTTCACCTTATGAGGTCGGTCACGTAAATTCTTTACTCGGTACTCACGTAGCAAAAGCGTGGTGGTCAGATCATTTAAAGTGTAAAAAGAAGCAATATGGTTCAAATAATAGTTCTTTTAACCAACCGGATGCAATGAAGCTCCATAATGGAGGTGAGACATCTGCTACACCTGACAGTGTAAAGAAGCAAGCTGGTATACATAAGATGCCCCATCATTCAAATTTCCCTGGCCATATGGACATCTTTAAGAACATGCAACCAGGACAATTCATACCATATGGGCCAGAATATACCAAAATGAAAGCCAAGGACCCATTTTTTGCCACTCATACGGCTTCAGGTCTTCCATTTTATCCTCTTGGCGCTCCTCCTACACTTGGAGAAGCTGTAGATATGCCATGGACTCAGGGCTCCACCCAACATTATACAAACATTGCTCCAGACAACTCGACAAGTGTATCGATCTCACCCGAAAACTTGGATGCTATCTTGGCGAACTTCGAGAGCTTTAAACAATTTGATACTGTTGATGATCATTCTGACCATTACTATTCAAGCAATGGTTTTAGCATGAAACAGGAACCCAAGAAATGGACAAAGAAAGTTCAGGAGGAATGGAAGATCCTGGAGAAGGATTTACCTGAAACTATATTTGTTAGGGTCTATGAGTCAAGAATGGATCTTATGAGGGCTGTCATTATTGGAGCACAGGGTACACCATACCATGATGGCTTGTTTTTCTTTGATATATTTTTCCCGACCAACTATCCGGATGCACCACCACATTTTGAGGACTTTGTTAGGGGACATTTCTTCAAAAGGGGTCATGATATCCTGGTGGCATGTAAGGCATATACAGATGGTGCTGAGGTGGGATCTCTAGTTAAAGGAGGGGTTCAAGATCTGGACGTGGGCGACAAGAGCTGCTCGAGCCATTTTCGACATTCCCTGAGCAAACTTTTGAGTATGCTTGTTGTTGAACTTAAAAAAATTGGGGTCAGTGACTGCGAGAAGTTCATGCCACGGCAAACGCCATCGACTTGGTAG 1746 41.81 MSFFSCHPVPLQIISLNVEVIDLDDDEASDADMAMFLQDNFDANNKGKGLYHHSDHQLKKTSSSRSFIPDVEVIESTNKDESNLPSASHNFIDLDNYCSESSAEDDEWIPFDEVMDVDAYSALQAHFDHMDIPSDIEVPIPWLPHGQKGNQTNIETSSLLAEPQIKPDAVNQLGRASALLKLKAALANSLSLPADIDVLSHLHESFEPFPSFSSQDTQPNKKTTASQYRDKSVSPYEVGHVNSLLGTHVAKAWWSDHLKCKKKQYGSNNSSFNQPDAMKLHNGGETSATPDSVKKQAGIHKMPHHSNFPGHMDIFKNMQPGQFIPYGPEYTKMKAKDPFFATHTASGLPFYPLGAPPTLGEAVDMPWTQGSTQHYTNIAPDNSTSVSISPENLDAILANFESFKQFDTVDDHSDHYYSSNGFSMKQEPKKWTKKVQEEWKILEKDLPETIFVRVYESRMDLMRAVIIGAQGTPYHDGLFFFDIFFPTNYPDAPPHFEDFVRGHFFKRGHDILVACKAYTDGAEVGSLVKGGVQDLDVGDKSCSSHFRHSLSKLLSMLVVELKKIGVSDCEKFMPRQTPSTW 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4443901 4447246 + Cp4.1LG02g01690.1 Cpe02g00703 464652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00703 581 Gene3D Ubiquitin Conjugating Enzyme 391 496 IPR016135 -
Cpe02g00703 581 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 430 581 IPR000608 -
Cpe02g00703 581 Pfam Ubiquitin-conjugating enzyme 435 496 IPR000608 -
Cpe02g00703 581 SUPERFAMILY UBC-like 417 495 IPR016135 -
Cpe02g00703 581 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 493 575 - -
Cpe02g00703 581 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 18 495 - -
Cpe02g00703 581 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 493 575 - -
Cpe02g00703 581 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 18 495 - -
Cpe02g00703 581 MobiDBLite consensus disorder prediction 209 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00703 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101219881 514.227
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00703 Cpe06g00690 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00703 Cpe-Chr2:4443901 Cpe17g00071 Cpe-Chr17:415289 1.65E-29 dispersed
Cpe05g01365 Cpe-Chr5:9604139 Cpe02g00703 Cpe-Chr2:4443901 3.84E-43 transposed
Cpe10g00194 Cpe-Chr10:1130257 Cpe02g00703 Cpe-Chr2:4443901 1.38E-46 transposed
Cpe02g00703 Cpe-Chr2:4443901 Cpe06g00690 Cpe-Chr6:4303540 8.49E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g227 . . . . . . . Bma13g00958 . . Cma01g01207 Cma09g00867 Car01g01032 Car09g00780 Sed05g2568 Cpe06g00690 Cpe02g00703 Bhi09g03415 Tan01g4399 Cmetu07g0826 . . Mch11g1071 . Cla11g01764 Cam11g1830 Cec11g1851 Cco11g1858 Clacu11g1991 Cmu11g1800 Cre11g2207 Cone6ag0142 . Cone14ag1066 Cone15ag1055 . Csa04g02346 Chy07g00079 . . . . . . Bpe01g00429 . . . Cmo01g01260 Cmo09g00856 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004169 0 6 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 0 1 1 1 1 1 1 1 5 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00703 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0