Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00713 ATGGACGACGAAGAAGAGTGTTTCTACGAGACCCTTGATCGCATTGCCTCCTCATGTTCTTGTTCAACTTCCAATTCCGATGACGATAGAGATTCGAACGCGAACTCCCCCAATTATGATTCCGAGCATCCTTTTCCAATACCCAAATTCCCAATGGCTGTTTCGAACTACGATATTTGGATCTCCGAGCCGGCCTCTGTGTTGGAACGCCGTGGCCGTCTTCTTCGAGAAATGGGTCTTAGCGGTGACCCTTCTCTCTCTCGGTCTAATACGGCTTTGGAATTGGATCATAGAGAAAAGGGTGCTGCCGATTTTGGTCGATCGGCGTCGTCGGAGTATTTGAGTCGTCAACGACAGCTTCCCCCTGTCATCATTCGCTCGAAATCGGATGGTTCGGCTGATTGCAACAGGAACACGAGCTCTTCACAAGCTTCCGGCAGTGATGCTGATAATCAGTGTAATTATTCGTCGTCTATTACTTCTCCTTCAATTCTTTCATTTCATTTGGTTGATGAGACCCCCACCACTTCATTTGCAAATAATCGTAATCGTTTAGTTGTTAAGTCCCTAAGCTGCAAGAGCGAGGGAGCTTCATCGGTTGCTTATATTGCTTCACAGCATAAGCCACCTTCTGGGAAAAATTGTAGATGGGCAGATGAGATTCGAAGCGATTCAATGGTTTTGAATACCAATTCTGATCCTAATCGATCGGCATTGTCTCAGAATGGCGAGAATAGACGAGAGATTAGTGAGGATTCGGGTTGTTCTACGAGTGGAATGGTCGATGAGAAAGTCTGCACTATCAAGGATCTTGACAATGGGAAAGACGGTTCGAAATTGAAAAAGAAAGGAGGTTGGTTGAAGAGTATAAAGAATGTTGCTAGCACGGTGAAAGGTCAAAAGGAGAGACGTAGCAGTGACGAGAGGGATACTTCATCTGAGAAAGGTGGAAGGAGGTCAAGCTCTGCAACAGATGATAGCCAAGATGTTTCGTTTCATGGACCGGAGAGAGTACGAGTTCGGCAGTATGGAAAGTCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAAGCACACAGTGGGTCAATATGGACCATTAAGTTCAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATCATTCATGTTTGGCAGGTCGTCGAGTCGGAGAAGAAGGGCGAGCTACTGATGGAGAAACCCGAAGAAGGGAATTTGAGTTTCTTACTTACAGCTAACGAATCACCAGAGCCGACTTCGTTATCTCCAAATGTGGATAGCCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGCCGAAAATCAGTGAGCTTGGAGAATGTTATAGTACCTGAGACTGTATTTGGGCTTTCCGAAAAACCCGTCTGTTCATTCGAGGGGCATCTCGATGTCGTGCTTGACCTTTCTTGGTCCAAATCGCAGCATTTGCTCTCATCTTCAATGGACAAAACCGTGAGGCTCTGGCACTTGTCAAGCAAATCCTGTTTGAAAATCTTTTCCCACAGTGATTATGTAACGTGCATCCAGTTTAATCCTATCGACGATAGATACTTCATTAGTGGATCATTAGACGCTAAAGTTCGTATATGGAGTATACCAGATCGTCAAGTCGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGCTATACGCCTGATGGCAAGGGTGCTTTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCTGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAGAACAAGAAGAAGAAATCTAGTCACAAGAAAATTACTGGATTCCAGTTTGCTCCAGGAAGTTCGTCAGAAGTGCTGATTACATCTGCAGATTCACGCGTTCGAGTGGTCGATGGTGTTGATCTCGTCTATAGGTTTAAAGGGTTCCGAAATACGAACAGCCAAATCTCGGCCTGTCTTTCATCGAACGGCAGGTATGTGATATCAGCGAGTGAGGATTCACATGTGTACATATGGAAGCACGAAGCTGATTCTCGACCCAGTAGGAGCAAGGGAGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCAAGACGTCTCCGTTGCTATTCCTTGGCCTGGTTTGGGCGACACATTGGAACTTCAAGACGATTATCATGGAGATGACAACACAATCGAAAACCATCTCGACGAAATCTCCTCTGCTAACCATCCTCCTACACCTGTGGAAGTAGCAAACGGCAGCGAGGATTCACTCTCGGCATCTGGTTGCACGAACAGCCCTCTCCACGGAACACTTTCGAGTGCCACCAATAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCGGCGGAAAAGCTGATTGTGAATACTCACAACAACCGTAGTCCTCATTCCAGTGAAATGTTTCAAGGATCATCAGCATGGGGTATGGTGATTGTGACTGCTGGGCTTCGAGGCGAAATCCGAACGTTCCAGAACTTCGGATTTCCAGTTAAGATTTAA 2526 45.92 MDDEEECFYETLDRIASSCSCSTSNSDDDRDSNANSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRGRLLREMGLSGDPSLSRSNTALELDHREKGAADFGRSASSEYLSRQRQLPPVIIRSKSDGSADCNRNTSSSQASGSDADNQCNYSSSITSPSILSFHLVDETPTTSFANNRNRLVVKSLSCKSEGASSVAYIASQHKPPSGKNCRWADEIRSDSMVLNTNSDPNRSALSQNGENRREISEDSGCSTSGMVDEKVCTIKDLDNGKDGSKLKKKGGWLKSIKNVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGELLMEKPEEGNLSFLLTANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLENVIVPETVFGLSEKPVCSFEGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSRVRVVDGVDLVYRFKGFRNTNSQISACLSSNGRYVISASEDSHVYIWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGLGDTLELQDDYHGDDNTIENHLDEISSANHPPTPVEVANGSEDSLSASGCTNSPLHGTLSSATNSYFFDRISATWPAEKLIVNTHNNRSPHSSEMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPVKI 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4500503 4506183 - Cp4.1LG02g01610.1 Cpe02g00713 464662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00713 841 Pfam WD domain, G-beta repeat 358 390 IPR001680 GO:0005515
Cpe02g00713 841 Pfam WD domain, G-beta repeat 466 501 IPR001680 GO:0005515
Cpe02g00713 841 Pfam WD domain, G-beta repeat 653 679 IPR001680 GO:0005515
Cpe02g00713 841 Pfam WD domain, G-beta repeat 507 544 IPR001680 GO:0005515
Cpe02g00713 841 MobiDBLite consensus disorder prediction 418 444 - -
Cpe02g00713 841 MobiDBLite consensus disorder prediction 330 344 - -
Cpe02g00713 841 MobiDBLite consensus disorder prediction 227 244 - -
Cpe02g00713 841 MobiDBLite consensus disorder prediction 18 40 - -
Cpe02g00713 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 471 505 - -
Cpe02g00713 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 511 545 - -
Cpe02g00713 841 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 2 276 - -
Cpe02g00713 841 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 277 841 - -
Cpe02g00713 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 400 IPR001680 GO:0005515
Cpe02g00713 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 511 IPR001680 GO:0005515
Cpe02g00713 841 SUPERFAMILY WD40 repeat-like 355 682 IPR036322 GO:0005515
Cpe02g00713 841 MobiDBLite consensus disorder prediction 297 322 - -
Cpe02g00713 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 392 - -
Cpe02g00713 841 PANTHER WD REPEAT DOMAIN 44 2 276 IPR040324 -
Cpe02g00713 841 PANTHER WD REPEAT DOMAIN 44 277 841 IPR040324 -
Cpe02g00713 841 MobiDBLite consensus disorder prediction 738 763 - -
Cpe02g00713 841 Gene3D - 343 707 IPR015943 GO:0005515
Cpe02g00713 841 MobiDBLite consensus disorder prediction 227 258 - -
Cpe02g00713 841 MobiDBLite consensus disorder prediction 291 344 - -
Cpe02g00713 841 MobiDBLite consensus disorder prediction 18 46 - -
Cpe02g00713 841 MobiDBLite consensus disorder prediction 131 153 - -
Cpe02g00713 841 SMART WD40_4 505 544 IPR001680 GO:0005515
Cpe02g00713 841 SMART WD40_4 598 637 IPR001680 GO:0005515
Cpe02g00713 841 SMART WD40_4 547 585 IPR001680 GO:0005515
Cpe02g00713 841 SMART WD40_4 464 502 IPR001680 GO:0005515
Cpe02g00713 841 SMART WD40_4 638 679 IPR001680 GO:0005515
Cpe02g00713 841 SMART WD40_4 352 391 IPR001680 GO:0005515
Cpe02g00713 841 MobiDBLite consensus disorder prediction 79 153 - -
Cpe02g00713 841 PRINTS G protein beta WD-40 repeat signature 378 392 IPR020472 -
Cpe02g00713 841 PRINTS G protein beta WD-40 repeat signature 531 545 IPR020472 -
Cpe02g00713 841 PRINTS G protein beta WD-40 repeat signature 489 503 IPR020472 -
Cpe02g00713 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 545 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00713 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1289.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00713 Cpe06g00704 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00713 Cpe-Chr2:4500503 Cpe10g00884 Cpe-Chr10:4972184 2.29E-06 dispersed
Cpe02g00713 Cpe-Chr2:4500503 Cpe06g00704 Cpe-Chr6:4365356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00713 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0