Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00724 ATGAATGAGAAGGCCAACGTCACCAAGGAGCTTAACGCCCGCCACAGAAAGATATTAGAAGGGCTTCTTAAGTTGCCAGAAAATAGGGAGTGTGCTGATTGCAAAGCTAAGGGACCACGATGGGCTAGTGTTAATTTAGGCATTTTTATATGTATGCAATGTTCTGGTATCCACAGAAGCCTTGGTGTTCACATATCGAAGGTACGGTCTGCTACCTTGGATACTTGGCTTCCAGAGCAGGTTACATTTATACAATCAATGGGGAATGAGAAGGCAAACAGTTATTGGGAGGCGGAGCTACCACCAAATTATGACAGAGTTGGGATTGAGAATTTTATTCGTGCAAAGTATGAAGATAAGAGATGGGTTTCTAAGGATGGCAAACCAAGATCACCTTCTCAAGTACAGGAGGAAAGGCCTTCTTTGCATGGGCAGAGGCCTGCGGAAAGAAGTGGATCAGGGTATTCAGGCCATTCTGAAAATTTGTTCGAGGAAAGGAAGAGACTTCAAACACATAGTGTGAAAGAGAGTATACCTGCCGCGAGAGTTAGTCTTCCTGTTCCTCCCAGAGGACCTGAACAAGTTGCTCCAGCCCCCAAACCATGCCAAGAGCCGAAACCAGAACCAGTTGTACAGCAAGCTGAAGCAACGAAACAGACTACAAATGATGCCCCAGCTGTCTCTCCTCCAAAAGTTGATTATGCTACTGATCTTTTTAACATGCTATCCTTTGATGGCCCCTCTGATGATGGCTCAGCTGCAGTTTCTACAGATGATAGTTCATGGGCTGGTTTCCAGTCTGCTGAAGAAGCATCATCAGCAGAGAAACCTGCGCCAACAAAACCAGCTGAAGCCATTCCCCAGTCCACTTCTGGAATTGAGGATCTTTTCAAAGATTCAACCTTAGTTTCACCTTCTTTAGTTCCAGATAAACCTGTGAAAGATGTTAAAAATGATATAATGAGTCTTTTTGAAAAGTCCAATATGGTCTCTCCATTTGCTATGCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTTCTCATGGCTGCTGCAGCTAAATCAGCTGCTGGGGACGCAAAATTTAGCAACGCTCAACCCGCTGTCCCCAATGGTACCAATGTTCCGCCTCAAAGTTGGCCAAATGTCACCTACCCGATCCCTGGATTGATGATGCAAATGGGTCCACAGGGTGGGCTGCAAACTACAGTGCAGTCAATGAACAGGGGGCTGGCAAATCCAGTTGGGAGTTCTGTTTCATATCCTACATCTAGCCTTTATAGCTTCGGTCAAGTTTCTTCAGTGCCGGTGAATGGCGTGAGCACCACCACCACCAACACCACAGGGAAAAACAAACCTCAATCGACCGCATCGGTGTCATCAGCGACTCCTTCACAGTCAGGAAAAGAGTATGATTTCTCCTCTTTAACCCAAGGTATGTTTTCAAAGCATTAA 1461 45.65 MNEKANVTKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVTFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVSKDGKPRSPSQVQEERPSLHGQRPAERSGSGYSGHSENLFEERKRLQTHSVKESIPAARVSLPVPPRGPEQVAPAPKPCQEPKPEPVVQQAEATKQTTNDAPAVSPPKVDYATDLFNMLSFDGPSDDGSAAVSTDDSSWAGFQSAEEASSAEKPAPTKPAEAIPQSTSGIEDLFKDSTLVSPSLVPDKPVKDVKNDIMSLFEKSNMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAAGDAKFSNAQPAVPNGTNVPPQSWPNVTYPIPGLMMQMGPQGGLQTTVQSMNRGLANPVGSSVSYPTSSLYSFGQVSSVPVNGVSTTTTNTTGKNKPQSTASVSSATPSQSGKEYDFSSLTQGMFSKH 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4585522 4591503 + Cp4.1LG02g01520.1 Cpe02g00724 464673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00724 486 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Cpe02g00724 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 486 IPR044520 GO:0005096
Cpe02g00724 486 CDD ArfGap 19 117 - -
Cpe02g00724 486 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Cpe02g00724 486 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Cpe02g00724 486 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Cpe02g00724 486 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Cpe02g00724 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 486 - -
Cpe02g00724 486 MobiDBLite consensus disorder prediction 190 206 - -
Cpe02g00724 486 MobiDBLite consensus disorder prediction 253 268 - -
Cpe02g00724 486 MobiDBLite consensus disorder prediction 442 486 - -
Cpe02g00724 486 MobiDBLite consensus disorder prediction 123 231 - -
Cpe02g00724 486 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Cpe02g00724 486 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Cpe02g00724 486 MobiDBLite consensus disorder prediction 245 291 - -
Cpe02g00724 486 SMART arf_gap_3 16 130 IPR001164 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00724 K12486 SMAP; stromal membrane-associated protein - csv:101214277 746.117
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00724 Cpe06g00717 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00724 Cpe-Chr2:4585522 Cpe20g00174 Cpe-Chr20:992807 2.40E-76 dispersed
Cpe11g01103 Cpe-Chr11:9197510 Cpe02g00724 Cpe-Chr2:4585522 9.67E-18 dispersed
Cpe15g00213 Cpe-Chr15:1823879 Cpe02g00724 Cpe-Chr2:4585522 7.41E-23 dispersed
Cpe02g00724 Cpe-Chr2:4585522 Cpe06g00717 Cpe-Chr6:4457683 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g290 . . . . . . . . . . . . Car01g01000 . . Cpe06g00717 Cpe02g00724 . . . . . . . Cla11g01802 Cam11g1868 Cec11g1892 Cco11g1898 Clacu11g2031 Cmu11g1836 Cre11g2243 Cone6ag0115 Cone9ag0133 . . Lsi04g01282 . . . . . . . Bpe11g00502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005696 1 1 2 2 2 0 2 1 0 1 1 1 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00724 Cpe_Chr02 FPKM 6.945938 6.802375 8.658057 10.174972 8.638239 8.913006 6.979324 6.07498 6.509442 7.276837