Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00725 ATGATGTTATCGCCATCGCCTTCGACGATAGCTCGGAGTTCACTCGAGGAAATGCTCGATTCGCTTCGACGAAGGGATGAGGTTGATAAGCCTAAAGACGCGCCCCCTGCATTGCCGTCTCGACCCACTTCGAAGGCTCGGACTCCCCCGGTGGGACGGGCTTTACCTGTCAATTTCAGGGTTAATGTTGATGGCTCCTCTGGCTGCTCTATTAATGGCTTTAATGGAAGGGAAGATGTAATGAGAAAGGAGAATCGTTTGGGTAACTTTGCATTCAAGAGATTGAATAGAGATCAAGATGAGGAATCGCCTTACATGTTAGCTTCTGAAAATGAAAATGGAGATCGAGTGAATGGTTCGAATCTTCGTGGGTCTTATTGGGAGGACAATATCGGTTATTTTCTTCAGAAGAAACTCCATGTTTGGTGTCAACTTCCAAATGGACAATGGGAGTTAGGAACCATACAGTCGAGCACTGGGGCGGAGGCATCTGTCATGCTTTCGAACAAAAAGGTTATTAAAATTTCGACCGTAGATCTTTTACCTGCCAATCCAGATATCATCGAGGGGGTTGATGATCTTGTACAGCTTGGTTTTCTGAACGAGCCTTCGGTTCTTCACAGTCTCCATCGAAGATTTTCTCAGGATAAGATTTATAGTAACGCAGGGTCGGTTTTGATAGCATTCAACCCCTTGAAAGACATTAAACAGTATGGAAAAGAATTTATTGAAGCCTACAGACAGAGAGTCATAAACAACCCTCATGTTTATGCTACAACAGATGCTGCTTATTCTGGGATGTTAAGAGATGAAGTTAATCAATCCATTATCATCAGCGGCGAAAGTGGAGCGGGAAAAACGGAGACAGCAAAATCTGTGCTTGAATACTTGACTTCTCTCGGTGGTGTCAGTGGCATAGATGACAGAATTTCTCGAGCGAATGTTATACTCGAAGCATTCGGGAATGCAAAAACCTCCAGAAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCCGAACAGGGAAGCTATGTGGTGCTGTAATCCAGACTTGTAAGAAAACTACTGCGACCGTGATATATTATAATTTCTCTTTCAGATTACTTTTATTAACTTTCTGTTACCGTTCGTGCATATCGCATGTCGACCCACCTGCCAAATTTCAAATAGTTCTGTTGGATAAGTCGAGAGTCATTCGCCTGGTTAATGGCGAAAGATCATTCCACATCTTCTATCAACTTTGTGCTGGACTACCATCTAGACTTAAAGAGAAATTTAATATCAGAGCGGCCAGTGAGTACAGTTACCTCAATCACAGTGAATGCCTGGTGATTGGTGGTGTCGATGATGCACGGAAATTTAACATTCTTGTGGAAGCCTTAGACACACTTCAATTCACAAAGGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCAGTTTTGTGGATAGGGAACATTACGTTTCAAATAATTGATAGCGAAAATCATGTAGAGGTCATAGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGCTGCAGTTTTAATGAGCTTAAGTTAGTTTTATCAACCCACAAAGAGCAATCTGGCAAGGATAGCATTGCTAAAAAATCGACATTACAACAGGTTGCTTTCTACTCATCTGTGAAGTCGGCTACTGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCGCTTCAACCAGGAAGGGAGTATTCTGGAAGATCCATTAATAAGAACGGCTTCGAACAATTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTATTCGGCATCTTTTCAAACTTCAGCAGGAGAAGCCTCTAGGAGTTCTCGCCTTGATGGACGAAGAGTTAAGTTTTCCGAAGGCTACAGACCTGACATTTGCTAATAAACTTAAGCAGCACTTTAAATCTCATCCCCGCTTTAAAGGGGAAAGAGGTAGGGCTTTCGGCGTTCGACATTACGTTGGAGAGGTTGTATATGATACAAATGGGTTTTTGGAGAAGAATAGAGATCTCCTGCCTTCAGATTCCATCCAATTCTTTTCATCATGTACTTCCAAGCTACTGAAAATATTTGCCTCCAAAATGGTTAACCATTCCTACAAACCAGCAGGTTCGATAAGCTCTACAAAGGGCGTAGAATCCCCTGAGCCAGGTGTTGGTACCAAGTACAAGGCTCTACTATTTGAGCTATTTCATAAATTGGAGTGCACGAGCCATCACTTCATTTGTTGCATGAGACCGAACCGAAGTCAAGTTTGTGGCTTATTTGAGGAGGACCTTGTCCTACAACAACTTAGGTACTGTGGCATTTTGGAGGTTATTAGGATTTCAAGGTCTGGATATCCTATCAGGATAACGCATAAAGAATTTGCTGGAAGGTATGAATTCTTCCTTGAAGAAGCGGGTGTAGCTCGAGATCCGTTGAGTATATCAATTGCTGTTCTGCAGCATTTTGATGTCCACCCCGAGATGTACCATGTTGGTTATACGAAACTATTATTCCGAACTGGGCAGATTCGGGCCGCCTTGGAGGAAAGGAGGACGCAAGCTATGCAAAGCATCCTTGGGGTTCAAAAACACTTCCGTGGTAGCCATTCTCGTGGCCACTTCCATGAACTTAAGCATGCCGCCACGATCTTACAATCATTTATTCGCGGCGAAAGTTCTAGAAGGAGAAGTACTGGTAAGGTGAAGAGGTTCTCATTCACTGTGTGCGCTTTCAATGTTCCTTCAAAGGTGTATGAACAGCAGGCAATCATACGATTACAATCCGTAATACGTGGTTCGTTGGTTCGAAATCATTTTATGGGCAAGAGTGATTCGAATAGGTTTGAAAACCGACCGAACAGGGGCAGGAGACTTTCAGAGGATCACGCGTTGCCTGCAACACTGACCGACCTTCAAAAGAGGGTCGTTGAAGCGGAAGCAACCATAGGGAAAAAGGAAGAGGAAAATGTTGCATTGCGGGACCAAACGAGTCTTGCTGCTGCTAAAAAGAGTCTTGCTACTGAAAATATGGCCGGAAAGGTTGGTGCAGGTACCTCACCACCTCACTATTACGATTCTGAAGATACGACGTCCATGGAATCTCGAACTCCCCGTGAAGCTGGAGCAGGCCGAGAAATGAATGGTACATCATTTTCTGTGAACAATCTCGTAAAGGAGTTCGAACAGCAAAAGAATGCATTCGATGATGATGCCAAAGGTTTGGCCGAAACAAAATCAGGTCAGGGACAGCCAGGAGGGGCTAACACGAATCCGGACGAAGAATACCGTAAAATTAAAGTCCGGTTCGAAGCATGGAAAAAGGAGTACAAGGCAAAACTACGTGAAAATAAACCTAAGGTTCATAAACATGGTCCTTTCGAGGCTGATATAATTCGTCGAAAATGGTGGGGGAAGTTGCGGTTAAGATCGTCATAG 3495 43.32 MMLSPSPSTIARSSLEEMLDSLRRRDEVDKPKDAPPALPSRPTSKARTPPVGRALPVNFRVNVDGSSGCSINGFNGREDVMRKENRLGNFAFKRLNRDQDEESPYMLASENENGDRVNGSNLRGSYWEDNIGYFLQKKLHVWCQLPNGQWELGTIQSSTGAEASVMLSNKKVIKISTVDLLPANPDIIEGVDDLVQLGFLNEPSVLHSLHRRFSQDKIYSNAGSVLIAFNPLKDIKQYGKEFIEAYRQRVINNPHVYATTDAAYSGMLRDEVNQSIIISGESGAGKTETAKSVLEYLTSLGGVSGIDDRISRANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKLCGAVIQTCKKTTATVIYYNFSFRLLLLTFCYRSCISHVDPPAKFQIVLLDKSRVIRLVNGERSFHIFYQLCAGLPSRLKEKFNIRAASEYSYLNHSECLVIGGVDDARKFNILVEALDTLQFTKEDQEHAFGLLAAVLWIGNITFQIIDSENHVEVIANEAVANAAKLMGCSFNELKLVLSTHKEQSGKDSIAKKSTLQQVAFYSSVKSATDARDALAKFIYASLFDWLVEQINKSLQPGREYSGRSINKNGFEQFCINYANERLQQHFIRHLFKLQQEKPLGVLALMDEELSFPKATDLTFANKLKQHFKSHPRFKGERGRAFGVRHYVGEVVYDTNGFLEKNRDLLPSDSIQFFSSCTSKLLKIFASKMVNHSYKPAGSISSTKGVESPEPGVGTKYKALLFELFHKLECTSHHFICCMRPNRSQVCGLFEEDLVLQQLRYCGILEVIRISRSGYPIRITHKEFAGRYEFFLEEAGVARDPLSISIAVLQHFDVHPEMYHVGYTKLLFRTGQIRAALEERRTQAMQSILGVQKHFRGSHSRGHFHELKHAATILQSFIRGESSRRRSTGKVKRFSFTVCAFNVPSKVYEQQAIIRLQSVIRGSLVRNHFMGKSDSNRFENRPNRGRRLSEDHALPATLTDLQKRVVEAEATIGKKEEENVALRDQTSLAAAKKSLATENMAGKVGAGTSPPHYYDSEDTTSMESRTPREAGAGREMNGTSFSVNNLVKEFEQQKNAFDDDAKGLAETKSGQGQPGGANTNPDEEYRKIKVRFEAWKKEYKAKLRENKPKVHKHGPFEADIIRRKWWGKLRLRSS 1164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4617228 4627158 + Cp4.1LG02g01530.1 Cpe02g00725 464674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00725 1164 MobiDBLite consensus disorder prediction 1031 1068 - -
Cpe02g00725 1164 MobiDBLite consensus disorder prediction 17 34 - -
Cpe02g00725 1164 Gene3D - 805 873 - -
Cpe02g00725 1164 Pfam Myosin head (motor domain) 390 628 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 Pfam Myosin head (motor domain) 191 355 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 ProSiteProfiles IQ motif profile. 939 967 IPR000048 GO:0005515
Cpe02g00725 1164 PANTHER MYOSIN 627 1015 - -
Cpe02g00725 1164 PANTHER MYOSIN 121 356 - -
Cpe02g00725 1164 PANTHER MYOSIN 390 627 - -
Cpe02g00725 1164 ProSiteProfiles IQ motif profile. 897 925 IPR000048 GO:0005515
Cpe02g00725 1164 Coils Coil 988 1015 - -
Cpe02g00725 1164 Gene3D - 597 627 - -
Cpe02g00725 1164 PANTHER MYOSIN 1015 1161 - -
Cpe02g00725 1164 Gene3D - 874 923 - -
Cpe02g00725 1164 PRINTS Myosin heavy chain signature 584 612 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 PRINTS Myosin heavy chain signature 273 298 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 PRINTS Myosin heavy chain signature 315 342 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 PRINTS Myosin heavy chain signature 219 238 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 Gene3D - 410 466 - -
Cpe02g00725 1164 Gene3D Myosin VI head, motor domain, U50 subdomain 470 596 - -
Cpe02g00725 1164 MobiDBLite consensus disorder prediction 1 15 - -
Cpe02g00725 1164 PANTHER MYOSIN-2 ISOFORM X1 627 1015 - -
Cpe02g00725 1164 PANTHER MYOSIN-2 ISOFORM X1 121 356 - -
Cpe02g00725 1164 ProSiteProfiles Myosin motor domain profile. 189 872 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 916 IPR027417 -
Cpe02g00725 1164 MobiDBLite consensus disorder prediction 1 53 - -
Cpe02g00725 1164 MobiDBLite consensus disorder prediction 1094 1116 - -
Cpe02g00725 1164 Gene3D Kinesin motor domain 184 388 IPR036961 -
Cpe02g00725 1164 Gene3D Kinesin motor domain 735 804 IPR036961 -
Cpe02g00725 1164 SMART MYSc_2a 183 873 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 136 185 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cpe02g00725 1164 Pfam IQ calmodulin-binding motif 899 916 IPR000048 GO:0005515
Cpe02g00725 1164 Pfam IQ calmodulin-binding motif 941 959 IPR000048 GO:0005515
Cpe02g00725 1164 Gene3D - 628 717 - -
Cpe02g00725 1164 PANTHER MYOSIN-2 ISOFORM X1 1015 1161 - -
Cpe02g00725 1164 PANTHER MYOSIN-2 ISOFORM X1 390 627 - -
Cpe02g00725 1164 SMART iq_5 938 960 IPR000048 GO:0005515
Cpe02g00725 1164 SMART iq_5 873 895 IPR000048 GO:0005515
Cpe02g00725 1164 SMART iq_5 896 918 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00725 K10357 MYO5; myosin V - csv:101210624 1632.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00725 Cpe06g00718 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01154 Cpe-Chr1:6860892 Cpe02g00725 Cpe-Chr2:4617228 0 dispersed
Cpe02g00725 Cpe-Chr2:4617228 Cpe17g00648 Cpe-Chr17:5286872 1.58E-128 dispersed
Cpe02g00725 Cpe-Chr2:4617228 Cpe06g00718 Cpe-Chr6:4471672 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g297 . . Bda07g00274 . . . . . . . . . . . . Cpe06g00718 Cpe02g00725 . . . . . . . Cla11g01804 Cam11g1870 Cec11g1894 Cco11g1900 Clacu11g2033 Cmu11g1838 Cre11g2245 Cone6ag0113 . Cone14ag1087 Cone15ag1098 Lsi04g01280 . . . . . . . Bpe11g00503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004216 2 1 1 4 3 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00725 Cpe_Chr02 FPKM 0.672917 0.567131 0.0 0.0 0.0 0.22746 0.0 2.864632 2.999435 2.372426