Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00727 ATGACCATGTCCGTTGCTGATCGTCGCAAGCTCTTCACGTTGTGTTCGATGTGGCAATCGGGGAATACTTCGTCTTCTTCGTCCTCCACTCAGAATCTTCATCATAGTATCCATGGCCCTAGTGATAGAAACTTAACTGCGTCGAATAATATGAAAACTTCATCGTCTTCCAAGACGGTGTCCTCTGTGGCGAAGTCGCTGTTGCCTCCTCGCCGTCGGCTTCGGCTTGATCCTAACAATTGCTTGTTCTTCCCTTATGAACCCGGGAAGCAGGTAAAGAGCGCCATCAGGTTGAAGAACACGAGCAGATCTCATGTAGCTTTCAAGTTCCAAACTACCGCCCCCAAGAGCTGTTATATGCGGCCTCCTGGTGGTATTCTGGCTCCAGGAGAAAATTTTATTGCTACTGTCTTCAGATTTGTTGAGCAGCCCGAGAATAATGAAAAGCCAATGGACCAGAAGAGCAAAATTAAGTTTAAGATCATGAGCCTTAAAGTGAAAGCAGGAATCGAATACGTACCCGAGCTGTTTGATGAACAGAAGGACCAAGTAACAGTTGAGCAAATTTTGCGGGTCGTATTTGTAGATCCAGAGCGACCTAGTGCTGCTCTTGAAAAACTAAAACGTCAATTGGCCGAAGCGGAGGCTGCACTTGAAGCACGCAAGAAACCTCCAGCAGAAACAGGTCCCCAGGTTGTAGGGGAAGGCCTTGTGATAGATGAATGGAAAGAAAGAAGGGAGAAATACCTTGCTCGTCAACAAGTTGTGAAAGTTGAAGAACTCGATCGAGAGTCGAATGCTATGCCGCTCATCGTAGATGATGAATTCTGGTTGTGA 837 46.59 MTMSVADRRKLFTLCSMWQSGNTSSSSSSTQNLHHSIHGPSDRNLTASNNMKTSSSSKTVSSVAKSLLPPRRRLRLDPNNCLFFPYEPGKQVKSAIRLKNTSRSHVAFKFQTTAPKSCYMRPPGGILAPGENFIATVFRFVEQPENNEKPMDQKSKIKFKIMSLKVKAGIEYVPELFDEQKDQVTVEQILRVVFVDPERPSAALEKLKRQLAEAEAALEARKKPPAETGPQVVGEGLVIDEWKERREKYLARQQVVKVEELDRESNAMPLIVDDEFWL 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4631576 4634732 - Cp4.1LG02g01500.1 Cpe02g00727 464676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00727 278 Coils Coil 201 224 - -
Cpe02g00727 278 MobiDBLite consensus disorder prediction 20 64 - -
Cpe02g00727 278 Pfam MSP (Major sperm protein) domain 74 184 IPR000535 -
Cpe02g00727 278 MobiDBLite consensus disorder prediction 20 66 - -
Cpe02g00727 278 ProSiteProfiles Major sperm protein (MSP) domain profile. 73 195 IPR000535 -
Cpe02g00727 278 PANTHER VESICLE-ASSOCIATED PROTEIN 4-1 40 257 - -
Cpe02g00727 278 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 40 257 IPR016763 GO:0005789
Cpe02g00727 278 SUPERFAMILY PapD-like 62 204 IPR008962 -
Cpe02g00727 278 Gene3D Immunoglobulins 70 199 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00727 - - - cmax:111476917 370.548
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00727 Cpe06g00722 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00727 Cpe-Chr2:4631576 Cpe05g01473 Cpe-Chr5:10204676 3.79E-107 dispersed
Cpe10g00820 Cpe-Chr10:4638720 Cpe02g00727 Cpe-Chr2:4631576 1.19E-99 wgd
Cpe02g00727 Cpe-Chr2:4631576 Cpe06g00722 Cpe-Chr6:4497701 1.39E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g304 . . . . . . . . . . . . . . . Cpe06g00722 Cpe02g00727 . . . . . . . Cla11g01808 Cam11g1874 Cec11g1897 Cco11g1905 Clacu11g2038 Cmu11g1843 Cre11g2248 . . Cone14ag1092 Cone15ag1103 Lsi04g01276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000537 4 3 4 3 5 2 5 3 2 3 3 3 3 3 4 4 2 5 5 3 5 3 3 3 3 3 3 6 6 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00727 Cpe_Chr02 FPKM 3.216802 3.377327 2.970684 3.156436 5.618184 5.422132 5.481912 8.565057 7.494159 8.311261