Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00728 ATGACCTGCACAATGGATTTGCTTCGATCTAATCTGTCGCGTGTTCGGATTCCGGAGCCTACCAATCGCATCTACAAGCAGGAATGCTGCTTGTCCTTCGATACTCCGAGATCAGAAGGTGGTCTGTTCATTGATTTGAATACATTTCTAGCATTTGGGAAGGATTTTGTAGTTTGGAATTATGAAAGGACTGGAAACCCTGTATATTTGCACATAAAGCAAACAAAGAAGTTGGTTCCTGAAGACCGGCCTTTGAAGAAACCTACGCTCTTAGCTATAGGAGTTGATGGTGGGTTTGATAACAATGAACCTGAATATGATGAAACTTATAGTGTAGTGATACTGCCTAATTATGAAACTCTTCCATTTCCTTCCGTGGAGCTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCTGTTTTATTGGCTGAGGGTGCTGAGAGAAAAGAGCAACTTGCATCATGGACAACTGATAAGCTGAAAATTAGTTCGTATGCAATGAATTTGCAGCAGATTGACAATGGTGTGATAGTTCCTCCTTCTGGATGGAAGTGTTCAAAATGTGATAAAACTGAGAATCTGTGGCTCAACTTAACTGATGGAATGATCCTTTGTGGGAGAAAAAATTGGGATGGAACAGGAGGTAACAACCATGCTGTTGAGCACTACAAAGATACAGGCTATCCTCTTGCTGTTAAGCTAGGGACAATCACGGCTGACCTTGAAGCAGCAGATGTGTACTCTTATCCAGAGGATGATAGTGTCTTGGACCCAATGCTAGGACAACACCTTGCTTTCTTTGGCATTGACTTTTCATCCTTACAGAAGACTGAAATGACCACTGCTGAAAGAGAGCTTGACCAAAACACTAATTTTGATTGGAATCGGATACAAGAAAGTGGACAGGAAGTTGAGCCAGTTTTTGGACCAGGTTACACAGGGCTGGTTAATTTGGGAAACAGCTGCTACTTGGCAGCGACAATGCAAGTTGTTCTTTCAACGCATTCATTCTGTGAAAGATACTACACCAAGCAAAGTTTAAAGTCGGCTTTTGAAACTGCACCTGCAGATCCGACTAAATGTGAAAGGATGAATTCTTCTTCCTCAGCAATAAATGCAAAACAGGAAGGCATACCCCCTCGGATGTTCAAAACAGTTATTGCCGCTAATCATCCAGAATTTTCTACGATGAGACAGCAGGATGCCTTGGAATTCTTCCTGCATTTTCTTGACCAAGTTGAGCAACAGAATTCTGGGAGTTCTGGAAACAATCCTGCAAGAAGTTTCAAATTTGGTATTGAGGATCGTATTGTGTGTTCCTCTGGAAAAGTTGCTTATAATAGACGGCATGATTACATTCTCTCATTGAACATCCCATTACACGAAGCTACTAATAAAGATGAAATTGAAGCCTTCCAGAAGCTCAAGGCTCAAAAGATCTTAGAAGGGAAGGAACTAGGCACTGATGAAATTGTGCGGCCTAGAGTACCTCTAGAGGCATGCCTTGCAAGCTTTTCATCTCCGGAGGAGATTCATGATTTTTACAGCACTGCCTTGCAAGCTAAGACAACAGCAACAAAGACTGCAAGATTAACTTCCTTCCCAGACTACCTGGTCTTGCATATGCGCAAATTTATTATGGGGGACGATGTCTATGTCGATGTCCCTGATATCATTGATCTTAGTCAAATGCGTAGTAAAGGACCAAGGGCTGGGGAAGAGCTTTTGCCTGAGGCTGGTCCTGAGGATGAGTTTCAGTCAAATAAACCTTCAGCGAACGAGGATATTGTTTCTCAACTTGTGTCAATGGGATTTAACTATCTTCACTGTCAGAAAGCTGCCATTAATACCTCAAACGCTGGAGTTGAAGAGGCTATGAATTGGTTACTTTCTCACATGGATGATCCAGATATAAATGATCCGATCTCCCAGAAGGCAGATTTTGTTGTTGATCAAACTAAAGTTGACATGTTGCTTCAATTTGGATTTCAAGAAGCAATTGCTAGAAAAGCGTTAAAGGCATCTGGTGGCGACATTGAGAAAGCGACAGATTGGATATTTAACAATCCTGAAGCTTCTATATCATCTGAGCCAGACTGTTTAGACGCCACTACATCAAGCACACCAACCAACCTCGATGCTGCTCTACCCGATGGTGGAGAGAGATATAGACTGATGGGAATAATAAGCCACATTGGGACGTCTACTCAATGTGGTCACTATGTTGCTCACATCTTTAAAGATGGTAGATGGGTTATTTTCAATGACGACAAGGTTGGGGTTTCGGTGAACCCACCCAAGGACATGGGATATTTATATTTCTTTGAGAGACTCAAAGAGTAA 2340 42.14 MTCTMDLLRSNLSRVRIPEPTNRIYKQECCLSFDTPRSEGGLFIDLNTFLAFGKDFVVWNYERTGNPVYLHIKQTKKLVPEDRPLKKPTLLAIGVDGGFDNNEPEYDETYSVVILPNYETLPFPSVELPEKVRLAVDAVLLAEGAERKEQLASWTTDKLKISSYAMNLQQIDNGVIVPPSGWKCSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKDTGYPLAVKLGTITADLEAADVYSYPEDDSVLDPMLGQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPVFGPGYTGLVNLGNSCYLAATMQVVLSTHSFCERYYTKQSLKSAFETAPADPTKCERMNSSSSAINAKQEGIPPRMFKTVIAANHPEFSTMRQQDALEFFLHFLDQVEQQNSGSSGNNPARSFKFGIEDRIVCSSGKVAYNRRHDYILSLNIPLHEATNKDEIEAFQKLKAQKILEGKELGTDEIVRPRVPLEACLASFSSPEEIHDFYSTALQAKTTATKTARLTSFPDYLVLHMRKFIMGDDVYVDVPDIIDLSQMRSKGPRAGEELLPEAGPEDEFQSNKPSANEDIVSQLVSMGFNYLHCQKAAINTSNAGVEEAMNWLLSHMDDPDINDPISQKADFVVDQTKVDMLLQFGFQEAIARKALKASGGDIEKATDWIFNNPEASISSEPDCLDATTSSTPTNLDAALPDGGERYRLMGIISHIGTSTQCGHYVAHIFKDGRWVIFNDDKVGVSVNPPKDMGYLYFFERLKE 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4636696 4651584 - Cp4.1LG02g01310.1 Cpe02g00728 464677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00728 779 Gene3D Cysteine proteinases 305 778 - -
Cpe02g00728 779 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 778 - -
Cpe02g00728 779 MobiDBLite consensus disorder prediction 568 589 - -
Cpe02g00728 779 Pfam Ubiquitin carboxyl-terminal hydrolase 312 774 IPR001394 GO:0004843|GO:0016579
Cpe02g00728 779 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Cpe02g00728 779 Pfam UBA/TS-N domain 650 685 IPR015940 -
Cpe02g00728 779 Pfam UBA/TS-N domain 592 628 IPR015940 -
Cpe02g00728 779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 108 IPR013083 -
Cpe02g00728 779 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 590 631 IPR015940 -
Cpe02g00728 779 PIRSF UBP 5 778 IPR016652 GO:0004843|GO:0016579
Cpe02g00728 779 SMART uba_6 592 630 IPR015940 -
Cpe02g00728 779 SMART uba_6 650 687 IPR015940 -
Cpe02g00728 779 Gene3D - 646 704 - -
Cpe02g00728 779 Gene3D - 585 645 - -
Cpe02g00728 779 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Cpe02g00728 779 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 778 - -
Cpe02g00728 779 SUPERFAMILY RING/U-box 161 270 - -
Cpe02g00728 779 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 258 IPR001607 GO:0008270
Cpe02g00728 779 CDD Peptidase_C19B 313 775 - -
Cpe02g00728 779 SUPERFAMILY Cysteine proteinases 307 777 IPR038765 -
Cpe02g00728 779 SUPERFAMILY UBA-like 616 691 IPR009060 GO:0005515
Cpe02g00728 779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Cpe02g00728 779 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Cpe02g00728 779 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 722 740 IPR018200 GO:0004843|GO:0006511
Cpe02g00728 779 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 648 688 IPR015940 -
Cpe02g00728 779 CDD UBA1_atUBP14 592 636 - -
Cpe02g00728 779 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Cpe02g00728 779 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 777 IPR028889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00728 K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12] - csv:101210128 1457.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00728 Cpe-Chr2:4636696 Cpe12g00631 Cpe-Chr12:6197448 4.82E-07 dispersed
Cpe17g00305 Cpe-Chr17:2068622 Cpe02g00728 Cpe-Chr2:4636696 9.61E-06 dispersed
Cpe02g00728 Cpe-Chr2:4636696 Cpe06g00723 Cpe-Chr6:4502731 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g317 . . . . . . . . . . . . . . . . Cpe02g00728 . . . . . . . Cla11g01809 Cam11g1875 Cec11g1898 Cco11g1906 Clacu11g2039 Cmu11g1844 Cre11g2249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008963 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00728 Cpe_Chr02 FPKM 34.849293 39.532433 41.889515 41.871807 25.696903 25.395441 25.180573 62.055981 57.45192 58.720367