Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00732 ATGATGAAGTGCGAGTTGTGTGGGCAGCTAGCGAGGACTTTCTGTGAGTCCGATCGGGCGAACCTATGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAGCATTCTAGGAGTCTTCTATGTCGTGCGTGTCAGTCGCCGACTCCATGGACGGCATCTGGTCGGAAGCTTACGCCTACGGTTTCTGTGTGTGAGGGATGTGTTGAAGTCCATGGTGGTAAATGCGAGCAAGGTGGATTTCAAGAGCGCCGTAGAGATAAGGAGGAGGAAGTTAATGGTGGTGATGATTTTGACGATGGTGAAGGTTTCGGGAGTTATGAGGGAGGTGACGAATTCGAGTGTTCTTCTGATCAACAAGGAACCAGGCCTTCTTACAACGACGAAGCGACTTCCTCTACTTCCCACAGGCCACCGAAGCAAGCAAGAGTTACAGGACCGACCTAA 459 50.54 MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKLTPTVSVCEGCVEVHGGKCEQGGFQERRRDKEEEVNGGDDFDDGEGFGSYEGGDEFECSSDQQGTRPSYNDEATSSTSHRPPKQARVTGPT 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4671120 4672733 - Cp4.1LG02g01330.1 Cpe02g00732 464681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00732 152 MobiDBLite consensus disorder prediction 97 111 - -
Cpe02g00732 152 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Cpe02g00732 152 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 140 - -
Cpe02g00732 152 MobiDBLite consensus disorder prediction 83 152 - -
Cpe02g00732 152 MobiDBLite consensus disorder prediction 117 145 - -
Cpe02g00732 152 CDD Bbox1_BBX-like 3 45 - -
Cpe02g00732 152 SMART bboxneu5 1 45 IPR000315 GO:0008270
Cpe02g00732 152 PANTHER OS08G0178800 PROTEIN 1 140 - -
Cpe02g00732 152 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00732 - - - cpep:111785759 216.853
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00732 Cpe06g00728 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00732 Cpe-Chr2:4671120 Cpe04g00741 Cpe-Chr4:7256555 1.98E-13 dispersed
Cpe10g00811 Cpe-Chr10:4597303 Cpe02g00732 Cpe-Chr2:4671120 7.86E-29 wgd
Cpe15g00755 Cpe-Chr15:7810367 Cpe02g00732 Cpe-Chr2:4671120 9.20E-13 wgd
Cpe02g00732 Cpe-Chr2:4671120 Cpe06g00728 Cpe-Chr6:4551660 3.75E-61 wgd
Cpe02g00732 Cpe-Chr2:4671120 Cpe09g00873 Cpe-Chr9:8003528 3.01E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g324 . . Bda07g00265 . . . . . . . . . . . . Cpe06g00728 Cpe02g00732 . . . . . . . . . . . . . . Cone6ag0104 Cone9ag0124 . . Lsi04g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49029 PF00643 zf-B_box 1.10E-05 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00732 Cpe_Chr02 FPKM 0.0 0.17561 0.696516 0.656099 0.0 0.0 0.0 0.133682 0.131853 0.106705