Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00733 ATGGTAAATCTCTCTCGATTTCTGTTTCTGTTTGTTTTCCTCTTCTCTCCGCCGTCTCTGGCGGTTGATTTCTTAACCCCATCTCAAAACCTCACCAACGCCGCCACTTTCGTCTCGGAAAAAGGGTTTTCCGAGCAAACCCCAAGAAATTTCACGAACCCATTTTTCGAAATCTGGCACAACAACCTCATCACGATTCGCCGAATCGATTACCCAACGGACCCATTACTCCGCCGAAACGGAATCCACCGCCGATTATCCGCCGGAAAACCCCCCGACGACTTAGAACCGGCGATGTGGAAGGGCTCGAAGGAGTTCATGAGAAGCGAGGCTTTGCACCAGTCGGTACCAGGGGATTACTGCGACACGTACGGTCTCTGCGGCGCATTTGGGAGCTGCGACATCGAGCAAATGCCGGCGTGTCAATGCTTAAAAGGGTTTCATCCTAAAGTGCAGGAGAAGTGGAATTTGATGGATTACACAGATGGGTGTGTTAGAAATCGGTCATTGAATTGCTCTACTGATATAATCGGGTTCGCAAAGTTGCCTGGGCTCAAACTTCCAGACATGAACATGTCGTGGGTGAATGATAGTATGAGCTTGAGTGAGTGCAGGGACAAGTGTTCGAGGAACTGTTCTTGTGTAGCGTTTGCAAACGCAGTGGCTCGTGGCTCAGGGAGTGGCTGTGTCATTTGGGTTGGGAATCTTGTTGATATCAAAGTGGTTCGAGGTGGAGGCCAGGATTTGTATATTAGAATGTTGGCTTCTGAATTGGGTATGTATATGAATTTGTTCTGTTTCTCTGGCTGTTCTGTTTCTTATTGTGTTTGA 831 48.13 MVNLSRFLFLFVFLFSPPSLAVDFLTPSQNLTNAATFVSEKGFSEQTPRNFTNPFFEIWHNNLITIRRIDYPTDPLLRRNGIHRRLSAGKPPDDLEPAMWKGSKEFMRSEALHQSVPGDYCDTYGLCGAFGSCDIEQMPACQCLKGFHPKVQEKWNLMDYTDGCVRNRSLNCSTDIIGFAKLPGLKLPDMNMSWVNDSMSLSECRDKCSRNCSCVAFANAVARGSGSGCVIWVGNLVDIKVVRGGGQDLYIRMLASELGMYMNLFCFSGCSVSYCV 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4677073 4677903 + Cp4.1LG02g01440.1 Cpe02g00733 464682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00733 276 Pfam S-locus glycoprotein domain 111 150 IPR000858 GO:0048544
Cpe02g00733 276 Pfam PAN-like domain 177 239 IPR003609 -
Cpe02g00733 276 PANTHER - 114 260 - -
Cpe02g00733 276 CDD PAN_AP_plant 170 252 - -
Cpe02g00733 276 ProSiteProfiles PAN/Apple domain profile. 172 254 IPR003609 -
Cpe02g00733 276 SMART ntp_6 174 253 IPR003609 -
Cpe02g00733 276 PANTHER - 114 260 - -
Cpe02g00733 276 Gene3D Hepatocyte Growth Factor 172 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00733 - - - cmos:111446489 516.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00733 Cpe-Chr2:4677073 Cpe20g00399 Cpe-Chr20:2267237 1.78E-25 dispersed
Cpe02g00733 Cpe-Chr2:4677073 Cpe02g00734 Cpe-Chr2:4678029 9.79E-66 tandem
Cpe10g00810 Cpe-Chr10:4590262 Cpe02g00733 Cpe-Chr2:4677073 4.26E-21 wgd
Cpe14g00709 Cpe-Chr14:4671123 Cpe02g00733 Cpe-Chr2:4677073 1.25E-42 wgd
Cpe02g00733 Cpe-Chr2:4677073 Cpe20g00398 Cpe-Chr20:2246374 1.85E-20 wgd
Cpe02g00733 Cpe-Chr2:4677073 Cpe06g00729 Cpe-Chr6:4563309 3.38E-22 wgd
Cpe02g00733 Cpe-Chr2:4677073 Cpe09g00875 Cpe-Chr9:8015940 2.84E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g365 . . . . . . . . . . . . . . . . Cpe02g00733 . . . . . . . . . . . . . . . Cone9ag0121 . . Lsi04g01266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00733 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0