Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g00749 | ATGGTATCCCCTGAAAATTCCAATTGGTTGTTTGATTATGGTTTGATCGATGACATCCCCGTATCGGATGCGAATTTCCCAGTCACCAGTTCGAGCTTCTCGTGGGCTGTTCAACCCTTTGATGGCACCCATGATGTCGGTGCGGAAATTGATGGGTCATCGGCAGATCTGGATGGTCGTCTAGAATCTGGCTCCAAGAAGAGGGTCAGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAAAAATTGCGGAGAGATAGGCTCAACGAGAAGTTTCTGACACTGGGCTCCATTTTGGAACCTGGAAGGACACCCAAAACCGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTGCAGGATAAGATTAAAGAATTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTGAAGGCCGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCACCCTGCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGAGTCAAGCTCCTGGCGGTAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTAGCCATGTGGCAGTTCATGCCTCCTGCTGCAGTCGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCCTAA | 711 | 49.23 | MVSPENSNWLFDYGLIDDIPVSDANFPVTSSSFSWAVQPFDGTHDVGAEIDGSSADLDGRLESGSKKRVRSDSCSGSSSKACREKLRRDRLNEKFLTLGSILEPGRTPKTDKAAILVDAVRMVNQLRSEAQKLKESNSSLQDKIKELKAEKNELRDEKQRLKADKEKLEQQVKSMHAHPAGFLPPPIPTFAAQSQAPGGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4764593 | 4767685 | + | Cp4.1LG02g01250.1 | Cpe02g00749 | 464698 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g00749 | 236 | CDD | bHLH_AtILR3_like | 80 | 155 | - | - | |
| Cpe02g00749 | 236 | PANTHER | TRANSCRIPTION FACTOR ILR3 | 1 | 236 | - | - | |
| Cpe02g00749 | 236 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983 | |
| Cpe02g00749 | 236 | Coils | Coil | 116 | 178 | - | - | |
| Cpe02g00749 | 236 | MobiDBLite | consensus disorder prediction | 51 | 81 | - | - | |
| Cpe02g00749 | 236 | Gene3D | - | 66 | 124 | IPR036638 | GO:0046983 | |
| Cpe02g00749 | 236 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 125 | 178 | - | - | |
| Cpe02g00749 | 236 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 126 | IPR011598 | GO:0046983 | |
| Cpe02g00749 | 236 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983 | |
| Cpe02g00749 | 236 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 236 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
| Cpe02g00749 | 236 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 80 | 150 | IPR036638 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g00749 | Cpe06g00744 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00749 | Cpe-Chr2:4764593 | Cpe05g01456 | Cpe-Chr5:10134456 | 2.05E-63 | dispersed | |
| Cpe01g00851 | Cpe-Chr1:5041732 | Cpe02g00749 | Cpe-Chr2:4764593 | 2.43E-117 | transposed | |
| Cpe08g00327 | Cpe-Chr8:2053165 | Cpe02g00749 | Cpe-Chr2:4764593 | 4.44E-48 | transposed | |
| Cpe02g00749 | Cpe-Chr2:4764593 | Cpe20g00391 | Cpe-Chr20:2199553 | 3.62E-24 | wgd | |
| Cpe02g00749 | Cpe-Chr2:4764593 | Cpe06g00744 | Cpe-Chr6:4666854 | 3.25E-122 | wgd | |
| Cpe02g00749 | Cpe-Chr2:4764593 | Cpe09g00886 | Cpe-Chr9:8079280 | 3.67E-57 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49031 | PF00010 | HLH | 6.40E-09 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g00749 | - | - | csv:101215402 | 400.979 |