Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00749 ATGGTATCCCCTGAAAATTCCAATTGGTTGTTTGATTATGGTTTGATCGATGACATCCCCGTATCGGATGCGAATTTCCCAGTCACCAGTTCGAGCTTCTCGTGGGCTGTTCAACCCTTTGATGGCACCCATGATGTCGGTGCGGAAATTGATGGGTCATCGGCAGATCTGGATGGTCGTCTAGAATCTGGCTCCAAGAAGAGGGTCAGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAAAAATTGCGGAGAGATAGGCTCAACGAGAAGTTTCTGACACTGGGCTCCATTTTGGAACCTGGAAGGACACCCAAAACCGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTGCAGGATAAGATTAAAGAATTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTGAAGGCCGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCACCCTGCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGAGTCAAGCTCCTGGCGGTAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTAGCCATGTGGCAGTTCATGCCTCCTGCTGCAGTCGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCCTAA 711 49.23 MVSPENSNWLFDYGLIDDIPVSDANFPVTSSSFSWAVQPFDGTHDVGAEIDGSSADLDGRLESGSKKRVRSDSCSGSSSKACREKLRRDRLNEKFLTLGSILEPGRTPKTDKAAILVDAVRMVNQLRSEAQKLKESNSSLQDKIKELKAEKNELRDEKQRLKADKEKLEQQVKSMHAHPAGFLPPPIPTFAAQSQAPGGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 4764593 4767685 + Cp4.1LG02g01250.1 Cpe02g00749 464698
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00749 236 CDD bHLH_AtILR3_like 80 155 - -
Cpe02g00749 236 PANTHER TRANSCRIPTION FACTOR ILR3 1 236 - -
Cpe02g00749 236 SMART finulus 81 132 IPR011598 GO:0046983
Cpe02g00749 236 Coils Coil 116 178 - -
Cpe02g00749 236 MobiDBLite consensus disorder prediction 51 81 - -
Cpe02g00749 236 Gene3D - 66 124 IPR036638 GO:0046983
Cpe02g00749 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Cpe02g00749 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Cpe02g00749 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Cpe02g00749 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cpe02g00749 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe02g00749 Cpe06g00744 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00749 Cpe-Chr2:4764593 Cpe05g01456 Cpe-Chr5:10134456 2.05E-63 dispersed
Cpe01g00851 Cpe-Chr1:5041732 Cpe02g00749 Cpe-Chr2:4764593 2.43E-117 transposed
Cpe08g00327 Cpe-Chr8:2053165 Cpe02g00749 Cpe-Chr2:4764593 4.44E-48 transposed
Cpe02g00749 Cpe-Chr2:4764593 Cpe20g00391 Cpe-Chr20:2199553 3.62E-24 wgd
Cpe02g00749 Cpe-Chr2:4764593 Cpe06g00744 Cpe-Chr6:4666854 3.25E-122 wgd
Cpe02g00749 Cpe-Chr2:4764593 Cpe09g00886 Cpe-Chr9:8079280 3.67E-57 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49031 PF00010 HLH 6.40E-09 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00749 - - csv:101215402 400.979