Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00751 ATGGTTTCTAAGTTCAAGAGCATGCACTTCGATTTGGACATCAAGCCTTCATCTGTTTCATATGAGAAGCTCATCTGTTACTGTTGTGGTTCACTTAAGGTGCATATGGCTCTTGATATAGCAAATGAAATGTGTGATGCAGATTTCACACCATCCACAGATGTCTTGCACTCCATTTTACATGCTATGGATGAAGGCTGTGAGTTTAATTTGGTTCATCAAGTCTATTCACTCATATGTCGCCACAACCTGAAGCCGGATAGTGAAGTGTTCAGGAGAATGATAAGTCTGTGCATCAAGATGAAAGACTTTAATGGTGCCTATGACATGCTTAAGGAATCTGAGAAAATGAACTTTACTCCTACAGCTAGCATGTACAATGCTATCATGGCCGGATACTTCCGAGAGAAGAACACTTCTGATGGATTGATGGTTCTCAAGCAAATGGAACTTGCGGATGTAAAACCAGATTCCAAGACTTTCAGCTATTTGATCAGCTATTGTGAATGTGAGGAGGATATTATCAAGTATTATGAAGAGCTGAAGAGTTCTGGAGTTCAAGCGACAAAGCATATTTTCATGGCCCTTATAAATGCATATGCTGCTCATGGACAATTTGAGAAGGCAAAACAGGTTATATCAGATGAAGAAATACCAGTCAAGAACTTGAATGAAATTAGAAGTGTGCTAGTCTCTGCTCTTGCTTCAAATGCGCAATTAGCTGATGCCCTGAAAATTTATGATGAAATGAAACAAGCTGGATGTAATTTGGAGCCCAAGGCTGTCATCAGTCTTATTGAGCACTATCCATTCGATGGGCCGGTGAACAGAATTTTTCAGTTACTTGGTGAATTGCATCATGATCTCGACGACTGGATAGATTGTTGTCGCAGAATTCTCTTGTTTTCTGTAAAACACAATGATCTGAGTTCGACCGTCGATCTATTGAAGCAGCTCAGTTACAGATGCTGTAATGATGAAGTGATGATGGGAGTTGCTTTTGATGAGATTTTTTCCCTCATTGCAGAGTCCGAGCCATCATATTTAGAAACAGGCCTGCAATTGCTTCAATTCATAAAGAATGATCTCGGTCTATCTCCCCCACGTAGATGCCTTGATTTTCTCCTGGGTGCTTGTGCCAACGCCAAAGATGCAGAGAGCTCTCTCCTCATCTGGAAAGAATATGAAAAAGCTGGCCTCCCACACAATACTATTAGTTACTTGCGGATGTATCAAGCTCTCTTAGCATCTGGGGACCAAACATCTGCCAAAGTTTTGCTTGAAAAAATTCCGAAAGACGATGCTCACGTTTGCTACGTAATCAAGGAATGCGAATCGGTTTATGTTGCCTCTTCCTCAGTAAACAAGAAAAAAGGAAGACACAAGAAAAAGATGCTGAAAATGAGCAGAAATGGAAGAGAGGTATGA 1428 40.69 MVSKFKSMHFDLDIKPSSVSYEKLICYCCGSLKVHMALDIANEMCDADFTPSTDVLHSILHAMDEGCEFNLVHQVYSLICRHNLKPDSEVFRRMISLCIKMKDFNGAYDMLKESEKMNFTPTASMYNAIMAGYFREKNTSDGLMVLKQMELADVKPDSKTFSYLISYCECEEDIIKYYEELKSSGVQATKHIFMALINAYAAHGQFEKAKQVISDEEIPVKNLNEIRSVLVSALASNAQLADALKIYDEMKQAGCNLEPKAVISLIEHYPFDGPVNRIFQLLGELHHDLDDWIDCCRRILLFSVKHNDLSSTVDLLKQLSYRCCNDEVMMGVAFDEIFSLIAESEPSYLETGLQLLQFIKNDLGLSPPRRCLDFLLGACANAKDAESSLLIWKEYEKAGLPHNTISYLRMYQALLASGDQTSAKVLLEKIPKDDAHVCYVIKECESVYVASSSVNKKKGRHKKKMLKMSRNGREV 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4775345 4788438 - Cp4.1LG02g01210.1 Cpe02g00751 464700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00751 475 Gene3D Tetratricopeptide repeat domain 1 65 IPR011990 GO:0005515
Cpe02g00751 475 Gene3D Tetratricopeptide repeat domain 334 458 IPR011990 GO:0005515
Cpe02g00751 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Cpe02g00751 475 Gene3D Tetratricopeptide repeat domain 173 329 IPR011990 GO:0005515
Cpe02g00751 475 Gene3D Tetratricopeptide repeat domain 66 172 IPR011990 GO:0005515
Cpe02g00751 475 TIGRFAM PPR: pentatricopeptide repeat domain 125 158 IPR002885 -
Cpe02g00751 475 TIGRFAM PPR: pentatricopeptide repeat domain 229 256 IPR002885 -
Cpe02g00751 475 Pfam PPR repeat family 122 168 IPR002885 -
Cpe02g00751 475 Pfam PPR repeat 229 255 IPR002885 -
Cpe02g00751 475 Pfam PPR repeat 193 213 IPR002885 -
Cpe02g00751 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Cpe02g00751 475 PANTHER OS02G0132600 PROTEIN 1 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00751 - - - cmos:111445890 918.687
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00751 Cpe-Chr2:4775345 Cpe10g00874 Cpe-Chr10:4928577 7.20E-17 dispersed
Cpe02g00751 Cpe-Chr2:4775345 Cpe13g00449 Cpe-Chr13:4815540 3.31E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g434 . . . Bda09g00385 . Bpe08g01139 . . . . Cma01g01150 . . . . . Cpe02g00751 Bhi09g01943 . . . Hepe01g1308 . . . . . . . . . Cone6ag0086 . . . Lsi04g01240 . . . . . . . . . Bma07g01313 . . Cmo01g01202 . . . . Car16g00562 . . . . . . . . . Cla05g01536 Cam05g1643 Cec05g1649 Cco05g1687 Clacu05g1637 Cmu05g1532 Cre05g1642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006190 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 5 1 2 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00751 Cpe_Chr02 FPKM 17.38026 18.775553 32.438168 30.657785 40.436623 41.317703 41.753677 25.507839 26.309906 27.404438