Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00754 ATGGCCAAAGAAAACTCCACCAGTAACTCCGTCTGCCACGGCGGCGATCAGTCGCCGGAGGAGAGTGGCTGGACCATCTACTTCCAAGATTTCCTCAACACCAACCACCCTACTCACTATCCTGCCTCCTCTTCATCTCATCCGTCGCCCGATCAAAGCTACTCCGTCGCCGACGCCGCCTCCTCCATCGCCAATCACAAACTACCCGTCGACGACAACCGAGCTGCCATGGATCCCAATTTGAGCTGCAAAGATCATATCAACCTTTTCAAGAGAAGGAAGATGATCAAGGAGTTGTTGGTTGAAGATGAAGCTTTGGAGGATACAGCTAGCTCTCCGGTTAACAGTCCAAAGGTTTCTGATACAAATTTCTTCAGTAAAAACCCGAGATACAACGAGAACCGGATAAAGGTAAATGAGAGAAGAGAAATGGGTTTAGTAGGAATTGGAAATGAGTACAAAGAGTTGAAGAGAAGAGGGCTTTGCTTGGTACCTTTGTGTATGGTAATGAATTATTTGGCTCAATAA 528 46.97 MAKENSTSNSVCHGGDQSPEESGWTIYFQDFLNTNHPTHYPASSSSHPSPDQSYSVADAASSIANHKLPVDDNRAAMDPNLSCKDHINLFKRRKMIKELLVEDEALEDTASSPVNSPKVSDTNFFSKNPRYNENRIKVNERREMGLVGIGNEYKELKRRGLCLVPLCMVMNYLAQ 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4821541 4822532 - Cp4.1LG02g01160.1 Cpe02g00754 464703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00754 175 PANTHER VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED 5 173 - -
Cpe02g00754 175 MobiDBLite consensus disorder prediction 1 20 - -
Cpe02g00754 175 PANTHER VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED 5 173 IPR039280 GO:0010089
Cpe02g00754 175 MobiDBLite consensus disorder prediction 38 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00754 - - - csv:105435101 197.593
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00855 Cpe-Chr1:5058885 Cpe02g00754 Cpe-Chr2:4821541 2.86E-06 transposed
Cpe02g00754 Cpe-Chr2:4821541 Cpe06g00753 Cpe-Chr6:4736999 7.54E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g463 Blo03g00577 . . . . . . . . . Cma01g01145 . . . Sed07g2662 . Cpe02g00754 Bhi09g01929 Tan01g4521 Cmetu04g2433 . Hepe01g1299 Mch11g1165 . . . . . . . . Cone6ag0082 Cone9ag0096 . . Lsi04g01228 . . . . . . . . . . . . Cmo01g01198 . . . . Car16g00557 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004838 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00754 Cpe_Chr02 FPKM 1.100861 1.789151 1.064612 1.102715 0.0 0.501615 0.0 1.772942 1.716933 2.358074