Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00755 ATGAGAGTGAAAAGAAGAGCCACGTCAGATGTGACACGTGGGCAGGAGTGCAGTTCATCTGGAAACCCTGACTGGAAAAATCATATATGGAAACCCACAGTCCACAAAGCTGAACATGTTCATCGGATTTACTGCAAGAAATTCAAGGTTCAAGGGATTGTGAAGATGGACAACAATTACCCACAATACAATGAAGGTGCTGGCTCTTCTCACACATCCAACTCTCCTCAATGTGCTTCAAACTTTAACATCTTCGATAAATCAGCATCAAACTCAAACTCGAATGTAAAAGGTAACGAGCTCCATAGAGCGAGCGACCTTCTGATGGCGGTGTCGGTGTGCACGGAGGCAAACTTTTCGAGAATCGCCGACCTGGCCGACACGGCGATGGACGAGCTCATAAAAGCAGCTCTTGATGGAGATCCTCTATGGATGCCCCAACAAAATGAAGAAGCTGAATCTTACTATACATTGTTGGATATAATGAAAATGGTTGAGGTTGGAGAGCCTCCTTCTTCCAGCCTTCTTGACTTCGATCTTTTCAACACCAAATCCGACACTGAATCCAACATCAACAACAACACAAATTTGGGCTTTAAAGACAATCAACAACAACAACAACACTATCTTCAAACTGAGTTTTCAAGACAAACTGAATTTGTCAAAATGGATCCACTCAGCATTGTTGGGTTTTTGATGGATTTGGAACAATGGTCACTTGTCTTCTCCGACATTGTTTCAAGAGCAGCAATTCTTCAAATGTGGTCATCAATGGGACCGGGAGGGACTTACGATGGAACTTTGCAAGTGATGACAGCTGAGTTTCAGCTCGCCTCACCACTTGTGGAGACAAGAGAGAGCTACTTTGGGAGGTTTTGCAAGCAATTAGCTCCATACACATGGGGAGTTGTTGATATTTCCTTGGAAGATCTCTTCCCTTATCCATCCATTGGCTTTTGTAGAAAACCCTCTGGCTGTTTGATCCAAGCATGTCCTGATGGAATCTCTAAGGTCATGTGGGTTGAGCATGTGGAAGTTGACAACAGATGTGTTCAACCAATGTTCCAACCATATATCAACTCTGGTTTGGCATTTGGTGCAAAGAGATGGGTTGCTTCTCTGGTTAGACACTGCATTTGGCAAACTACTTTAGAGGCCAAGAGCACTTCAACAATCAATGGGGTTTCAATACTACAAGCTGGAAGGCTTAGTGTGTTGAAGTTGGCTGAGAGAATGACAAGGACCTTTTATAATGTTGTGAGTGGTTCTAAAGAAAATCCATGGATGAAAATTCCCATTCCTGGACCTCATGACATTAGGGTTATGACCCAGAAAGCCAAAGAGAATGATCCTGGACGTCCTCCGTGTACATCGGTGATCTTCACTACTTCAGCTCAAGTTCCGAACAATCCGAATGAAGTTTTCCAGTTCCTTCGTCATGAGAAGTCTCGAAACAAGTGGGACATCCTTTCATTTGGTTACGTCATCACGGAACTTGCCTGCATTATCAATGGAAACGACTCGAGAAACCGGGTGTCGATAATTCAAGTGAACTCTTCGCCGAGAAAAGTCGAGATCTTCTACCTGCAAGAGAGTTACTTCGACGCAACGGGATCTTATATAGTCTATGCACCTGTTGATCTCTTTGCCATGTCGATACTCTTACGTGGAGGAAACCCAGATAATGTGGCTATCTTGTCTTCTGGTTTTGTTGTCCTTCCAGATAACCTGAAAATGAATGGACAGGAAATTGAAGCTGATGGTAGCATCGTGACAGTGGCCCTCAACATCGTTGATCATTCAATTACTGAAAGGATCCCATTTGATTCAATGGTTTCCATGCATAGGATTATGAATGAAACTGTAGCCTCAATCAAACAGGCTTTCCAAGTAGAACAATTTTAA 1905 43.2 MRVKRRATSDVTRGQECSSSGNPDWKNHIWKPTVHKAEHVHRIYCKKFKVQGIVKMDNNYPQYNEGAGSSHTSNSPQCASNFNIFDKSASNSNSNVKGNELHRASDLLMAVSVCTEANFSRIADLADTAMDELIKAALDGDPLWMPQQNEEAESYYTLLDIMKMVEVGEPPSSSLLDFDLFNTKSDTESNINNNTNLGFKDNQQQQQHYLQTEFSRQTEFVKMDPLSIVGFLMDLEQWSLVFSDIVSRAAILQMWSSMGPGGTYDGTLQVMTAEFQLASPLVETRESYFGRFCKQLAPYTWGVVDISLEDLFPYPSIGFCRKPSGCLIQACPDGISKVMWVEHVEVDNRCVQPMFQPYINSGLAFGAKRWVASLVRHCIWQTTLEAKSTSTINGVSILQAGRLSVLKLAERMTRTFYNVVSGSKENPWMKIPIPGPHDIRVMTQKAKENDPGRPPCTSVIFTTSAQVPNNPNEVFQFLRHEKSRNKWDILSFGYVITELACIINGNDSRNRVSIIQVNSSPRKVEIFYLQESYFDATGSYIVYAPVDLFAMSILLRGGNPDNVAILSSGFVVLPDNLKMNGQEIEADGSIVTVALNIVDHSITERIPFDSMVSMHRIMNETVASIKQAFQVEQF 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4827195 4833862 + Cp4.1LG02g01260.1 Cpe02g00755 464704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00755 634 ProSiteProfiles START domain profile. 115 378 IPR002913 GO:0008289
Cpe02g00755 634 MobiDBLite consensus disorder prediction 1 25 - -
Cpe02g00755 634 CDD START_ArGLABRA2_like 120 378 - -
Cpe02g00755 634 PANTHER PROTEIN FWA, PUTATIVE-RELATED 56 631 - -
Cpe02g00755 634 SUPERFAMILY Bet v1-like 214 378 - -
Cpe02g00755 634 Pfam START domain 206 378 IPR002913 GO:0008289
Cpe02g00755 634 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 631 IPR042160 -
Cpe02g00755 634 SMART START_1 180 380 IPR002913 GO:0008289
Cpe02g00755 634 SUPERFAMILY Bet v1-like 401 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00755 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101212560 805.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00755 Cpe-Chr2:4827195 Cpe04g00733 Cpe-Chr4:7208678 4.28E-112 dispersed
Cpe10g00792 Cpe-Chr10:4503487 Cpe02g00755 Cpe-Chr2:4827195 7.37E-27 wgd
Cpe15g00750 Cpe-Chr15:7784636 Cpe02g00755 Cpe-Chr2:4827195 2.49E-16 wgd
Cpe02g00755 Cpe-Chr2:4827195 Cpe20g00379 Cpe-Chr20:2136801 1.75E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g464 . . . . . . . . . . Cma01g01144 . . . . . Cpe02g00755 . . . . . . . . . . . . . . . . . . Lsi04g01227 . . . . . . . . . . . . Cmo01g01197 . . . . Car16g00556 . . . . . . . . . Cla05g01515 Cam05g1629 Cec05g1633 Cco05g1662 Clacu05g1614 Cmu05g1514 . . . . Cme04g00844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013609 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00755 Cpe_Chr02 FPKM 41.279701 38.57988 18.382238 20.407845 16.682449 14.371606 16.65081 7.366258 7.793876 6.157191