Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00759 ATGGTTGCCTCTGTGGAGCTTAGCTGCAAAATCCTCACCATTCCGCCGTCATCTTCTCATTCAAATTCCAAGATTTCTTCTTCTTTCTCTCGATTTCCGGTTCATTTCCGGCGATTTTTGCCCAATTCATCTCCGAAAGAGCTGGATGGTATTTTGAGAGACTACGTCGGGAGAGCGAGCCCTCTATACTTTGCAGAGAGGTTGACTGAGCACTACAGACGTCCCAATGGTGAGGGGCCTCATATTTTCTTGAAGAGAGAAGATCTTAACCACACAGGGGCTCACAAGATTAATAACGCTGTTGCTCAAGCTTTGCTTGCTAAGCGTTTGGGAAAGAAACGGATTATAGCTGAAACAGGTGCAGGTCAGCATGGTGTTGCAACTGCTACTGTTTGTGCTAGGTTTGGACTAGAATGTATCATCTACATGGGCGCCCAAGACATGGAAAGACAAGCTCTCAATGTGTTCAGAATGCGGCTTCTTGGGGCCGAGGTTAGGCCAGTTCATTCTGGTACTGCCACACTGAAAGATGCTACTTCAGAAGCTATAAGGGATTGGGTGACTAATGTAGAGACTACCCATTATATCTTGGGATCTGTTGCTGGGCCCCATCCATATCCCATGATGGTTAGAGATTTTCATGCAGTGATTGGTAAAGAAACAAGACAACAGGCCTTGGAGAAGTGGGGAGGGAAGCCTGATGTTCTAGTGGCCTGTGTTGGAGGAGGTTCGAACGCTATGGGACTATTTCATGAGTTTGTTAATGACAAAGATGTTAGGTTGGTTGGTGTCGAGGCTGCAGGTTTTGGCGTGGATAGTGGTAAGCATGCAGCAACTCTGACCAAAGGGGAAATCGGAGTTCTACATGGAGCCATGAGTTATTTACTACAGGATGACGATGGTCAAATAATTGAACCTCATTCGATCAGTGCAGGTTTGGATTACCCTGGGGTTGGACCAGAGCATAGTTATTTGAAGGATGCAGGTCGTGCCGAGTACTACAGTGTCACTGATGACGAAGCACTGGAAGCTTTCAAGAGATTGTCACGGTTGGAGGGCATAATCCCAGCTCTGGAGACATCTCATGCTCTGGCTTATCTCGAGAAGCTGTGCCCGACCCTAGCGGACGGAACAAAGGTCGTGCTTAACTGCAGTGGCAGAGGTGATAAGGATGTTCACACAGCGATCAAGCATTTGCAAGTTTGA 1206 47.26 MVASVELSCKILTIPPSSSHSNSKISSSFSRFPVHFRRFLPNSSPKELDGILRDYVGRASPLYFAERLTEHYRRPNGEGPHIFLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRQQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDKDVRLVGVEAAGFGVDSGKHAATLTKGEIGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSYLKDAGRAEYYSVTDDEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLADGTKVVLNCSGRGDKDVHTAIKHLQV 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4850779 4854419 - Cp4.1LG02g01040.1 Cpe02g00759 464708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00759 401 PANTHER TRYPTOPHAN SYNTHASE-RELATED 45 401 - -
Cpe02g00759 401 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 44 398 IPR036052 -
Cpe02g00759 401 TIGRFAM trpB: tryptophan synthase, beta subunit 46 398 IPR006654 GO:0004834|GO:0006568
Cpe02g00759 401 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 45 401 - -
Cpe02g00759 401 CDD Trp-synth_B 45 394 IPR006654 GO:0004834|GO:0006568
Cpe02g00759 401 Gene3D - 46 214 IPR036052 -
Cpe02g00759 401 Hamap Tryptophan synthase beta chain [trpB]. 4 399 IPR023026 GO:0000162|GO:0004834
Cpe02g00759 401 Gene3D - 57 392 IPR036052 -
Cpe02g00759 401 PIRSF Trp_syn_beta 16 401 IPR023026 GO:0000162|GO:0004834
Cpe02g00759 401 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 89 103 IPR006653 GO:0004834|GO:0006568
Cpe02g00759 401 Pfam Pyridoxal-phosphate dependent enzyme 57 386 IPR001926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00759 K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] - csv:101220286 698.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00759 Cpe-Chr2:4850779 Cpe09g00895 Cpe-Chr9:8147806 3.96E-90 dispersed
Cpe02g00759 Cpe-Chr2:4850779 Cpe09g00894 Cpe-Chr9:8138378 1.37E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g472 Blo03g00575 Blo03g01443 Bda07g00347 Bda09g00390 . Bpe08g01133 . . . . Cma01g01141 . . . Sed07g2665 . Cpe02g00759 Bhi09g01922 Tan01g4526 Cmetu04g1540 . Hepe01g1295 Mch11g1169 . . . . . . . . Cone6ag0078 Cone9ag0093 . . Lsi04g01224 . . . . . . . Bpe11g00532 . . Bma14g00349 . Cmo01g01193 . . . . Car16g00553 . . . . . . . . . Cla05g01511 Cam05g1626 Cec05g1630 Cco05g1658 Clacu05g1611 Cmu05g1511 . . . . Cme04g00849
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008087 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00759 Cpe_Chr02 FPKM 2.222222 3.296145 0.0 0.0 3.709624 5.804588 1.610517 0.0 0.0 0.0