Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00777 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGAAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTGACATCATCGGAATCTGAACCGCGACGGAGCCTCCGCAGCCGGAATGTGCGGTACAACATCGATTTCGACGATTTTCTTGAAGAAGACGATGAGGATGAGGAAGAGAACGAGAGAAGAAGAGAGAAGAAGCTCAAGCTTGTTGTGAAGCTGAACCAGAGCAGAGACGGAGAGCATCTGTCGCCGGTGGCCAGACTTTCTAGGTCAGGAGCGCGTGGAGAGGACGCGGCGGAGTACGGTTCGTCGGCGTCGGAAGGGGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGAGGCGAAGAAGAGGATGACGATGAAGATGGAGATGAAAATGAAGATGATGACATTGATGAGGAAAGGGGAAGGAAGGTGGGCTCGAAGGGGTCCGACTCTGTTCCAGGGACTCCCCCAGATCGATCATCCGGGTTGCCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCTACCGTTAGGAACAAGTTGGCTAACGGATCATATTCAACTTTGGAGCAGTTTGAGCGTGACGTATTTCTGATATGCTCAAATGCAATGCAATACAATTCACCAGAAACCATTTATCACAAACAGGCACGTTCCATTCAAGAGCTTGCCAAGAAGAAATTTGAGAGGGTAAGAATTGAAGTTGAACGCTCGGAGAAAGAGTTGAAGTTGGAGCAGAGTACAAAATTCAATTCATACATCAAGAAACAACCACCAAAGAAACCCTTTTTCAGGACTTTTCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACACTTGCTGGCACGGGCGACGTACAGAACAGTTCCAATCCAATCCATGGTGCTCACTGTGAGGTTCCTAACAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCTTCCTTGATACTACTAATCTGGACAGGGCTGAAGAGCTCTTCTCAGGAAAGGGTCTTCTAGGTAAATTAGGGAGAAAGACATCTGTGTTTGATGACAACCGCCGTGCAACTTACAGTATTTCTAATTCACCAGCGCCAAGATCGGAGTCGATATTTTCAACCTTTGAGGATGAAATAAGACAGCTTGTTGCGGTTGGGCTTCATGCGGAGTATTCCTATGCAAGGAGTCTGGCTCGATTTGCTGCGACACTCGGTCCTAGTGCGTGGAAAGTTGCATCCCAGAGGATTCAGCAGGCTGTACCTGTTGGATGTAAATTTGGCCGTGGTTGGGTTGGAGAATACGAGCCACTTCCAGCACCAGTATTATTGTTTGAGAACAACAACCAGAAGGAACTTGGTTTTAATAATAACTTGCATTCTACCAGCGAATTAAGAAAGGATGGAAAGCCTTCAGACACTCCTTTGCCAAAGAAGGAATATCCTCTAAGTGCTCCAAGTTCAGAAGTGAATGGTCTCGCTAGAGGATCCACCTTAGATGGGAAACCGTCTTTCTTTAGGTCTACCACCCCAAGTCCCGGTCTATCTCCACGGAAAAACCGACAGACCAAGAATTTTACAGAGGGAGAGAAGGTTAAAAACCAAGTTGAGTTAAATTCCTTGCCCTCACTTAAACAAAATAATGTTGATCTTGGTGTAGAGAAGCAGCTTCCAGCCAATCTGAATATGACTACTTCTAGATCTAGAGATATTTCATCGGTAAACTTGAATCTTGTGGAATCTGCGACATATAAACTCCCCAGTGTTAATGGCGTGGTGGCCGGAGGATTGCCTAATGGTAAATTCCCAAGCAATTGTTTGAATAGTCCACGGGCTGCTGTATCGTCTCCTAGCTTGCCTTCTCAAACAGCTCCAGTGGCAACTTCCCATGGACAGGACTTACACCCCAGTAAGCCAGTACAATTGATGAGAATGATGATACCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTCATCTGATTCTCTGCCAGCTTTATCATCAGCTCCTTCTGTAATGAGAAACGATTCTAATAATGCTGCTGCAGTGGCTTCTCGTGCATGGATGTCCATTGGGGCTGGAGGGTTTAAACAAGTCAGAGATAATTCCACACCTAAAAGTCAAATCTCTGCAGATTCACTGTATAATCCAGCTCGGGAATTTCATCCACAAATGACACGAGCATGGGGCGAGTTTCGTGCTGGAGGCAATCAGCTTCAGTCTGAGAAGAGTAACTTCCCTATGCAGGCATTTGTTCCACAAGCCACTCTTGTAGCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAGTTCAGGCCGACATGTCTAAGTTCCAGTTGCAGTCGACTTGGCAAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACACGAAATGCTTCCTCCCGACTTGAATATTGGTTTTCATTCTCCTGGGTCTCCCGTGAAACAATCCTCTAGTGTTCTGGTTGACTCCCAGCAGCCAGACCTGGCTTTGCAACTTTAA 2637 46.45 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDFDDFLEEDDEDEEENERRREKKLKLVVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSASEGEDEPERKPLKKRRIGGGEEEDDDEDGDENEDDDIDEERGRKVGSKGSDSVPGTPPDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFERDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRIEVERSEKELKLEQSTKFNSYIKKQPPKKPFFRTFQEPIGSDFSSGATLAGTGDVQNSSNPIHGAHCEVPNNIDGQVEGSSSFLDTTNLDRAEELFSGKGLLGKLGRKTSVFDDNRRATYSISNSPAPRSESIFSTFEDEIRQLVAVGLHAEYSYARSLARFAATLGPSAWKVASQRIQQAVPVGCKFGRGWVGEYEPLPAPVLLFENNNQKELGFNNNLHSTSELRKDGKPSDTPLPKKEYPLSAPSSEVNGLARGSTLDGKPSFFRSTTPSPGLSPRKNRQTKNFTEGEKVKNQVELNSLPSLKQNNVDLGVEKQLPANLNMTTSRSRDISSVNLNLVESATYKLPSVNGVVAGGLPNGKFPSNCLNSPRAAVSSPSLPSQTAPVATSHGQDLHPSKPVQLMRMMIPERAPKQENSSNQSSSDSLPALSSAPSVMRNDSNNAAAVASRAWMSIGAGGFKQVRDNSTPKSQISADSLYNPAREFHPQMTRAWGEFRAGGNQLQSEKSNFPMQAFVPQATLVANEQQLQNRSMIYPQLVQADMSKFQLQSTWQALSPHNQPRKKHEMLPPDLNIGFHSPGSPVKQSSSVLVDSQQPDLALQL 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4946316 4952116 - Cp4.1LG02g00890.1 Cpe02g00777 464726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00777 878 MobiDBLite consensus disorder prediction 648 667 - -
Cpe02g00777 878 Coils Coil 265 292 - -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 1 15 - -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 130 145 - -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 855 878 - -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 1 176 - -
Cpe02g00777 878 ProSitePatterns Bromodomain signature. 194 250 IPR018359 -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 832 878 - -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 33 48 - -
Cpe02g00777 878 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 878 - -
Cpe02g00777 878 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 878 - -
Cpe02g00777 878 Pfam Bromodomain 182 262 IPR001487 GO:0005515
Cpe02g00777 878 SMART bromo_6 169 277 IPR001487 GO:0005515
Cpe02g00777 878 MobiDBLite consensus disorder prediction 689 713 - -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 539 559 - -
Cpe02g00777 878 SUPERFAMILY Bromodomain 159 274 IPR036427 GO:0005515
Cpe02g00777 878 MobiDBLite consensus disorder prediction 62 78 - -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 648 673 - -
Cpe02g00777 878 PRINTS Bromodomain signature 205 221 IPR001487 GO:0005515
Cpe02g00777 878 PRINTS Bromodomain signature 221 239 IPR001487 GO:0005515
Cpe02g00777 878 PRINTS Bromodomain signature 239 258 IPR001487 GO:0005515
Cpe02g00777 878 Gene3D - 175 296 IPR036427 GO:0005515
Cpe02g00777 878 MobiDBLite consensus disorder prediction 110 129 - -
Cpe02g00777 878 CDD Bromodomain 176 272 - -
Cpe02g00777 878 MobiDBLite consensus disorder prediction 492 565 - -
Cpe02g00777 878 ProSiteProfiles Bromodomain profile. 188 258 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00777 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1375.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00777 Cpe06g00774 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00777 Cpe-Chr2:4946316 Cpe15g00642 Cpe-Chr15:7130332 2.58E-86 dispersed
Cpe17g01124 Cpe-Chr17:8508645 Cpe02g00777 Cpe-Chr2:4946316 5.28E-10 transposed
Cpe02g00777 Cpe-Chr2:4946316 Cpe06g00774 Cpe-Chr6:4882970 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00777 Cpe_Chr02 FPKM 5.970652 5.857192 23.16584 22.060356 119.516724 123.24028 118.149849 3.3705 3.200596 3.045715