Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00781 AACCCACGGAGGTTAGTTGGCCATTTCAGTCGAACGCCGCCACACCGGTGCTCTCTTCTTCCTGCCATTGCCAATTCAATCAAAGCTCGAAATCTCCGTCGTCCAGACTTCACGGGTACAGTTCCTGCCGGCAGTGTAGTTCCACTGATTTTAATGGAAGCACCGCCATTCTCTATCGCTGTTTCTTCTTCTCGAACTGTAATTCGATCATTTCCGTCGTCGTTTCATACCAGCTCTCTCGTTTTTCTTCGCAATAATCGTTACAAAACTTGTCATCTCAAAGTTAAGTCCACCGGTAAGTTTGCGGTTCGTGCCTCATTTTCGGGTGACTCAGTCGTGACTTTGCTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATTAAAGATGTGCAAACTCCAGAGGACATTCTGAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCAGCCATGGATGTGCTAAACAATAAAGGAATGGCTGAAGCACTCTGTACTTATATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTTCAATTACTCTTCGAATCAAGTGACGAGAATGGACCAGTAAAAGGACTTGGCTTAATACCGGGTGTGGTTGGGCGTTTCGACTCTTCCAATGGTTTTAGTGTACCCCATATTGGGTGGAATGCTTTGGAAATCTCAGATGACTCTGAGATCTTGGATGATATTTGTAATCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCTGACAAGAACAAGGAGTGGATCTCTTCTACTTGCAGCTATGGTGACAGGTTTATAGCCTCAGTTAGAAGGGGAAATGTCCATGCAGTTCAATTCCACCCAGAAAAGAGTGGAGATGTAGGCCTGTCTGTCCTCAGAAGATTCTTGCTTCCAAAGTCAACTTTGACCAAGAAACCTACTGAGGGGAAGGCATCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGACAAATGATCAAGGGGATCTTGTTGTTACCAAAGGGGACCAATATGACGTAAGGGAGCAATCAGAAGAGAATGAGGTGAGGAACCTTGGCAAACCGGTTGAGCTTGCTGGACAATACTACAAGGATGGAGCTGACGAGGTCAGTTTTTTGAATATAACTGGTTTCCGTGACTTCCCTCTTGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGTGGCGGAATTAGAGATTTTACGGATGCAAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTCAGATCTGGAGCTGATAAAATATCTATCGGAAGTGATGCAGTTTATGCTGCTGAGGAATATTTAAGAACTGGTGTAAAGACTGGAAAGAGCAGCTTGGAACAGATTTCTACTGTTTATGGAAATCAGGCTGTCGTGGTAAGTATTGATCCTCGAAGAGTGTACCTTAAAAGTCCTGATGATGTGGAGTTCAAAGTCATTCGAGTTACTAACCCAGGTCCTAATGGAGAAGAATATGCATGGTATCAGTGTACAGTGAATGGAGGTCGAGAAGGTCGACCTATTGGAGCTTATGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATACTGCTAAATTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATTTAGATCTAGTAAAGCTGATATCGGATTCTGTGAGCATCCCTGTTATTGCCAGCAGCGGTGCTGGGTGTTCTGACCATTTCTCAGAGGTGTTTAACAAGACAAATGCATCTGCTGCCTTAGCTGCTGGCATTTTCCATCGCAAGGAGGTATTCCCTGAGATCCCTTTATCTTAG 1893 44.27 NPRRLVGHFSRTPPHRCSLLPAIANSIKARNLRRPDFTGTVPAGSVVPLILMEAPPFSIAVSSSRTVIRSFPSSFHTSSLVFLRNNRYKTCHLKVKSTGKFAVRASFSGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNNKGMAEALCTYIENDRPFLGICLGLQLLFESSDENGPVKGLGLIPGVVGRFDSSNGFSVPHIGWNALEISDDSEILDDICNRHVYFVHSYRAMPSDKNKEWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLLPKSTLTKKPTEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQSEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISTVYGNQAVVVSIDPRRVYLKSPDDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDLDLVKLISDSVSIPVIASSGAGCSDHFSEVFNKTNASAALAAGIFHRKEVFPEIPLS 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4975137 4982891 - Cp4.1LG02g00910.1 Cpe02g00781 464730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00781 630 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 124 623 - -
Cpe02g00781 630 Gene3D Aldolase class I 334 626 IPR013785 -
Cpe02g00781 630 CDD HisF 331 623 IPR004651 GO:0000105|GO:0000107
Cpe02g00781 630 CDD GATase1_IGP_Synthase 113 311 IPR010139 GO:0000105|GO:0016763
Cpe02g00781 630 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 124 623 - -
Cpe02g00781 630 Gene3D - 109 333 IPR029062 -
Cpe02g00781 630 SUPERFAMILY Class I glutamine amidotransferase-like 112 311 IPR029062 -
Cpe02g00781 630 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 112 313 IPR010139 GO:0000105|GO:0016763
Cpe02g00781 630 Pfam Histidine biosynthesis protein 332 622 IPR006062 GO:0000105
Cpe02g00781 630 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 113 311 IPR010139 GO:0000105|GO:0016763
Cpe02g00781 630 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 112 320 - -
Cpe02g00781 630 Pfam Glutamine amidotransferase class-I 115 310 IPR017926 -
Cpe02g00781 630 SUPERFAMILY Ribulose-phoshate binding barrel 328 624 IPR011060 -
Cpe02g00781 630 PIRSF IGPS_HisHF 110 626 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00781 K01663 HIS7; imidazole glycerol-phosphate synthase [EC:4.3.2.10] - csv:101205184 1048.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00781 Cpe06g00777 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00781 Cpe-Chr2:4975137 Cpe06g00777 Cpe-Chr6:4906718 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g538 Blo03g00552 . Bda07g00369 . . . . . . . . Cma09g00961 Car01g00993 Car09g00876 Sed04g3225 Cpe06g00777 Cpe02g00781 Bhi09g01662 Tan01g4575 Cmetu01g2068 . . Mch11g1201 . . . . . . . . . . . . Lsi02g01893 Csa07g01105 . . . . . . Bpe11g00554 . . Bma14g00332 . Cmo01g01168 Cmo09g00961 . . . . . . . . . . . . . Cla09g01020 Cam09g1076 Cec09g1076 Cco09g1096 . . Cre09g1042 . . . Cme01g01017
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002500 2 3 2 2 2 1 4 2 1 3 1 1 2 2 1 4 1 4 3 2 2 2 2 2 1 1 2 2 1 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00781 Cpe_Chr02 FPKM 2.208626 1.559128 3.738003 2.498433 2.035738 2.608775 0.945339 5.060021 3.221511 3.494625