Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00788 ATGGAAAAAACAGGCTCCTCCTTCATCTTCCTAGCGTTCTTCCTCCTTCAAACACTGACCAAACATGAAGCCACCAAAGTTCCAGCCATCATAGTATTCGGAGATTCCTCTGTAGATTCCGGCAACAACAACCACATCTCCACCGTTCTTAAGAGCAATTTTCCTCCTTATGGCCGTGATTTCGACGGCGGAAAGCCCACCGGAAGATTCTCCAACGGCAAGATCGTTACAGACTTCATCTCTCAAGCTTTTGGAATCAAAGCTACCATCCCAGCCTACTTGGATCCAAGCTTTAATATCACTGATTTCGTCACCGGGGGCAACGCCACCATAGCTAAATCTCTCTATCTCATCAGCTTAGGCACCAATGACTTCCTCGAAAACTACTTCCTTCTTCCTCGGCGATCGTCCAAGTTTTCCGTGGAAGAGTACCAGAGTTTTCTAGTGCGAACGGCTGCGGAGTTTGTGCGGAAGCTATACAAGCTCGGGGCGAGGAAGATGTCGATCGGGGGGCTCCCGCCGATGGGGTGTCTTCCATTGGAGAGGACCTCTAGCGTGGTTTTTGGAGGTGGTGGTGAGTGTGTTGAGAAGTACAATGGAATTGCAAAGGATTTCAATGGGAAGTTGATGGGGTTGGTGGAGATGTTGGAGAAGGAATTGGGTGGGATTCGGATTGTGCTTTCGAATCCATTTGATGTTCTTTCCGACATGATTGATCATCCTAGCTACTATGGGTTTAGAAACTCAGCAAAAGCATGCTGTGGAACAGGCAGGTTTGAGATGGGATTCATGTGCTCAAGATTGAGTCCATTTACATGTGATGATGCCAACAAGTACGTGTTTTGGGATGCCTTTCATCCCACACAAAAGGCTCATTCCATTATGGCAAATCATATTGTTAAAACTTATCTATCAATCTTTCTTTCAACATAA 933 46.3 MEKTGSSFIFLAFFLLQTLTKHEATKVPAIIVFGDSSVDSGNNNHISTVLKSNFPPYGRDFDGGKPTGRFSNGKIVTDFISQAFGIKATIPAYLDPSFNITDFVTGGNATIAKSLYLISLGTNDFLENYFLLPRRSSKFSVEEYQSFLVRTAAEFVRKLYKLGARKMSIGGLPPMGCLPLERTSSVVFGGGGECVEKYNGIAKDFNGKLMGLVEMLEKELGGIRIVLSNPFDVLSDMIDHPSYYGFRNSAKACCGTGRFEMGFMCSRLSPFTCDDANKYVFWDAFHPTQKAHSIMANHIVKTYLSIFLST 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5041637 5044377 - Cp4.1LG02g00750.1 Cpe02g00788 464737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00788 310 CDD SGNH_plant_lipase_like 28 299 IPR035669 -
Cpe02g00788 310 Gene3D SGNH hydrolase 17 305 IPR036514 -
Cpe02g00788 310 PANTHER GDSL ESTERASE/LIPASE EXL3 9 106 - -
Cpe02g00788 310 PANTHER GDSL ESTERASE/LIPASE EXL3 108 304 - -
Cpe02g00788 310 PANTHER ANTER-SPECIFIC PROLINE-RICH PROTEIN APG-LIKE 9 106 - -
Cpe02g00788 310 PANTHER ANTER-SPECIFIC PROLINE-RICH PROTEIN APG-LIKE 108 304 - -
Cpe02g00788 310 SUPERFAMILY SGNH hydrolase 29 303 - -
Cpe02g00788 310 Pfam GDSL-like Lipase/Acylhydrolase 30 299 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00788 - - - csv:101207130 445.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00788 Cpe-Chr2:5041637 Cpe15g00857 Cpe-Chr15:8370476 1.33E-119 dispersed
Cpe11g00272 Cpe-Chr11:1463381 Cpe02g00788 Cpe-Chr2:5041637 1.43E-58 dispersed
Cpe19g01049 Cpe-Chr19:7239528 Cpe02g00788 Cpe-Chr2:5041637 6.43E-58 dispersed
Cpe02g00788 Cpe-Chr2:5041637 Cpe04g00830 Cpe-Chr4:7735635 1.45E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g568 . . . . . . Bma10g00574 . . . Cma01g01115 . Car01g00985 . . . Cpe02g00788 Bhi09g01691 Tan01g3119 . . Hepe01g1251 Mch11g1212 . . . . . . . . . . Cone14ag1177 Cone15ag1190 Lsi02g01883 . . . Blo07g00885 . Bda05g00700 . . . . . . Cmo01g01161 . . . . . . . . . . . . . . Cla09g01031 Cam09g1086 Cec09g1085 Cco09g1106 . . Cre09g1051 . . Chy01g01052 Cme01g01002
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000811 2 3 2 3 2 3 3 3 3 3 2 3 4 3 3 4 3 6 3 3 3 3 3 3 3 4 3 3 3 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00788 Cpe_Chr02 FPKM 25.046305 26.039789 30.322569 31.42959 28.314289 27.526371 28.590248 39.744297 38.783855 41.793186