Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00791 ATGGAAAGAAATAAGGGAACCCACAGTATACTATTATTTCCCTTCCGGGGCTCTGCGTGGGAGAGAGAGGGAGAGAGATACAGAGAGATACAGAGAGATTCAGTCCTTCAAGAAGAAGAAGAAGAAGAAGAGATGTCTGACCTAGACCGCCAAATTGAGCAGTTGAAGAATTGCGAGCCGCTCAAGGAGTTTGAAGTTAAAGCTCTTTGTCTAAAGGCCATTGAAATCCTCGTCGAAGAGAGCAATGTTCAGAGGGTTGATGCCCCTGTTACTATATGTGGAGACATCCATGGGCAGTTTTATGATTTGATAGAGCTTTTTAAAGTAGGAGGCGATTGTCCAAAGAGCAACTACTTATTTCTTGGCGATTTTGTTGACAGAGGAATATACTCAGTTGAGACATTTCTACTATTACTTGCTCTGAAGGTTAGATATCCAGACCGGATAACTCTTATTAGAGGGAACCATGAAAGCCGTCAAATCACACAGGTTTATGGATTTTATGACGAGTGCCTTTGCAAATATGACTCTGTGAATGTTTGGAAATACTGTACTGATGTTTTTGATTACTTAAGTCTCTCGGCTCTTATTGAAAACAAGATATTTAGTGTCCATGGTGGTCTCTCTCCAGCCGTAACAACATTAGATCAGATCAGAACAATTGATAGGAAACAAGAAGTACCTCACGAGGGTGCCATGTGTGACCTTCTGTGGTCTGATCCTGAAGACATTGTAGATGGCTGGGGTTTGAGTCCTCGAGGAGCTGGTTTCCTGTTTGGTGGCAGTGTAGTGACTTCATTTAACCACACGAACAACATCGATTATATTTGTCGGGCTCATCAGCTGGTAATGGAAGGATTTAAATGGATGTTTAATAATCAGATAGTTACAGTCTGGTCAGCTCCTAATTATTGTTACAGATGTGGTAATGTAGCTGCTATACTTCAACTGGATGAAAACCTTAATAAACAGTTTCGTGTCTTCGGTGCTGCTGAACAGTTCGTCGTGTTTTCGCTTCTATTAGCTTCTGCCTCTTCCCATATCAATTCCAGCGATGAGGGTTTCATTTCGATGGTCGTATCTCAAAAGGGTCTTAACTTCATCAAGGATTTCTTGATAGACAAGGCAATTTCCTCCATCATTCCCCTTCGTTTGCCCAATATTGAGAAGACTGTCAATATTGCTCTTATCGGCAAAGTTCATATGGGTCTTTCCGATATAATCATTGGCAGCATCGAGGTCGAATCGTCGGATATTCGGATCGGTGAGACGGGTGTCAACATAGTTGTCACGAAAGCCACTGCTAATATGAGTATGAAATGGCAATATACGTACAACACTTGGTTGTTCGAAATTTCTGATAAAGGAGACGCCTCTGTTCAGGTTGATGGTATGAATATAGGCCTAACTCTGGGTTTAAATCAACGAAACGGAACTCTTGGGCTGTCTCTTTCAGAATGCGGATGCAATGTCGAACATATCTCCATACACGTGCACGGTGGCGCATCTTGGCTTTACCAAGGGTTGGTTGATGCTTTTGAAGGGAAAATAGAGTCAACAGTTGAAGATAATATTTCCAAAAAAATTGGAGAAGGGGTAGTAAAGCTCGACTCGTCGTTGGGGTCACTTCCACGAGAAATCTCGCTAGCTCATGTTGCGGTTCTAAACGTCACTTTTGTGGGGAGCCCTGTGTTGTCCTCTTCTTCCATTGAATTCAAAATTGATGGTTTATTCAGCCCTTCTAAGAAGACAATAGTTTCTAGCTATAACCGAGGCGATACCGAAGATTCCAGCAATGGAATATCTCGACGTGAAAATATTCTCGACTCAGCTTCTCGTGTTCCCTTTATACACCTTTTGAACACTGCAGCATGGAAATGGATTATTCCTCTACTCTACAGGCAGTATCCAGATGACGATATTGTCCTGAATATCTCCGCCTCCTCTCCACCTTCCTTGAGACTGCGAGACCAAGATATCGCTGCCTCGATTTACGTCGACATGATTATCGAGGTTGTAAACAATGATGAAGTTATACCGGTTGCTTGCATTTCGTTGGAAGTTACTGCCTCTTTTTCTCCAGTAATCTTGGAGAAGAATTTGGTTGGTCATGTAACCTTGGAAGATCTTTCATTGTCTTTGAAATGGAGCAAGATTGGTCGTATTCATCTTTATCTAATTGAGAGGACCCTTGTGGGGTTGATCAAAACAGTCGTGGTACCGTTTGTCGACCTGTATCTCTTAAAAGGAGTCCCGTTGCCAAGTTTTCATGGATTAGCCCTCGAGGACGTCGAAATGGCTTTCAATTCTTCAAGGATCATCATGTGCAGCGATGTTGCCTTAAGTGAAGGGTTTAGGCAGCTAAAAGCATCGATGTGA 2379 42.45 MERNKGTHSILLFPFRGSAWEREGERYREIQRDSVLQEEEEEEEMSDLDRQIEQLKNCEPLKEFEVKALCLKAIEILVEESNVQRVDAPVTICGDIHGQFYDLIELFKVGGDCPKSNYLFLGDFVDRGIYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLCKYDSVNVWKYCTDVFDYLSLSALIENKIFSVHGGLSPAVTTLDQIRTIDRKQEVPHEGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHTNNIDYICRAHQLVMEGFKWMFNNQIVTVWSAPNYCYRCGNVAAILQLDENLNKQFRVFGAAEQFVVFSLLLASASSHINSSDEGFISMVVSQKGLNFIKDFLIDKAISSIIPLRLPNIEKTVNIALIGKVHMGLSDIIIGSIEVESSDIRIGETGVNIVVTKATANMSMKWQYTYNTWLFEISDKGDASVQVDGMNIGLTLGLNQRNGTLGLSLSECGCNVEHISIHVHGGASWLYQGLVDAFEGKIESTVEDNISKKIGEGVVKLDSSLGSLPREISLAHVAVLNVTFVGSPVLSSSSIEFKIDGLFSPSKKTIVSSYNRGDTEDSSNGISRRENILDSASRVPFIHLLNTAAWKWIIPLLYRQYPDDDIVLNISASSPPSLRLRDQDIAASIYVDMIIEVVNNDEVIPVACISLEVTASFSPVILEKNLVGHVTLEDLSLSLKWSKIGRIHLYLIERTLVGLIKTVVVPFVDLYLLKGVPLPSFHGLALEDVEMAFNSSRIIMCSDVALSEGFRQLKASM 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5058959 5070887 - Cp4.1LG02g00780.1 Cpe02g00791 464740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00791 792 PRINTS Serine/threonine phosphatase family signature 118 145 IPR006186 GO:0016787
Cpe02g00791 792 PRINTS Serine/threonine phosphatase family signature 186 212 IPR006186 GO:0016787
Cpe02g00791 792 PRINTS Serine/threonine phosphatase family signature 272 292 IPR006186 GO:0016787
Cpe02g00791 792 PRINTS Serine/threonine phosphatase family signature 89 116 IPR006186 GO:0016787
Cpe02g00791 792 PRINTS Serine/threonine phosphatase family signature 294 310 IPR006186 GO:0016787
Cpe02g00791 792 PRINTS Serine/threonine phosphatase family signature 215 242 IPR006186 GO:0016787
Cpe02g00791 792 PRINTS Serine/threonine phosphatase family signature 151 175 IPR006186 GO:0016787
Cpe02g00791 792 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 360 566 IPR017943 GO:0008289
Cpe02g00791 792 Gene3D - 38 336 IPR029052 -
Cpe02g00791 792 SMART bpi1_3 360 583 IPR017942 GO:0008289
Cpe02g00791 792 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP-X ISOZYME 1 45 333 - -
Cpe02g00791 792 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 568 780 IPR017943 GO:0008289
Cpe02g00791 792 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 45 333 - -
Cpe02g00791 792 Pfam Calcineurin-like phosphoesterase 89 281 IPR004843 GO:0016787
Cpe02g00791 792 CDD BPI1 355 578 - -
Cpe02g00791 792 Pfam LBP / BPI / CETP family, N-terminal domain 364 533 IPR017942 GO:0008289
Cpe02g00791 792 Gene3D - 358 769 - -
Cpe02g00791 792 SMART bpi2_2 591 777 IPR001124 GO:0008289
Cpe02g00791 792 CDD MPP_PP2A_PP4_PP6 47 331 - -
Cpe02g00791 792 SMART pp2a_7 61 332 IPR006186 GO:0016787
Cpe02g00791 792 ProSitePatterns Serine/threonine specific protein phosphatases signature. 152 157 IPR006186 GO:0016787
Cpe02g00791 792 SUPERFAMILY Metallo-dependent phosphatases 43 341 IPR029052 -
Cpe02g00791 792 Pfam LBP / BPI / CETP family, C-terminal domain 619 779 IPR001124 GO:0008289
Cpe02g00791 792 Coils Coil 38 58 - -
Cpe02g00791 792 Gene3D - 363 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00791 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] - qsu:112029885 571.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01165 Cpe-Chr1:6926964 Cpe02g00791 Cpe-Chr2:5058959 9.45E-124 dispersed
Cpe02g00791 Cpe-Chr2:5058959 Cpe07g00610 Cpe-Chr7:4192995 1.87E-142 dispersed
Cpe09g00489 Cpe-Chr9:3229614 Cpe02g00791 Cpe-Chr2:5058959 2.86E-89 dispersed
Cpe02g00791 Cpe-Chr2:5058959 Cpe06g00786 Cpe-Chr6:4992943 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g582 Blo03g00539 Blo03g01461 Bda07g00380 Bda09g00410 . Bpe08g01110 . . . . . Cma09g00974 Car01g00981 Car09g00888 Sed07g2701 . Cpe02g00791 Bhi09g01699 Tan01g3130 Cmetu10g1344 . Hepe01g1246 Mch11g1219 . . . . . . . . Cone6ag0042 Cone9ag0048 . . Lsi02g01878 Csa07g01012 . . . . . . . . Bma07g01282 Bma14g00321 . Cmo01g01157 Cmo09g00973 . . . . . . . . . . . . . Cla09g01035 Cam09g1091 Cec09g1090 Cco09g1111 . . Cre09g1056 . . Chy01g01058 Cme01g00995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001703 1 2 1 2 2 2 4 3 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 3 6 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00791 Cpe_Chr02 FPKM 15.399467 16.874132 16.61784 16.687044 24.891951 26.60157 25.698212 16.491663 16.22617 17.042791