Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00796 ATGGCGTCTTCGGACGACGAGGCGGAGGCCTTGCCACTGTGTGTTTCAAATTATCACTTCGTGGATCATAAGGAAGAACCTGTTTCATTCTCCATTTTGCCGATTCTATGGGATGGAGTGGACAGATTGGATGGCGGCCAAGAACCTGTTTTCCTGCATGGAACAGCTGATGATGGACTTCAAAAGGTTTATAAACAGGTAACTGCATGGAGGTTTGATGTTTGTGGTACAAATCCAGAGATATCGGTGCTTTCCAAAGAAAACGTGTGGATTAAGCTTCAGAAGCCTAGAAAGAGCTTTGAGGATACTATTAGAACCATCTTGATTACAGTACAATGCCTTCATGTTTTAAAGAAAAATCCGGACACACCTAGCAAATCTTTGTGGGATCAATTAGCCAAAATCTTCAGCTTGTATGAGGTGAGGCCTTCACAAAATGATTTGGTGGACCACATGTCTCTTATCAGTGAAACTGTCGAAAGGGATGATCAATTGGCAAAGTCCCAGTTCTTACTTGCATTCCTTGAAGAGAAGCCCATTAAGAAAAGGTCATGTCACGAGGATGTGCAATGTACAGCGAGGCCTAGTTTTATAGTTGATGATTTAGATGATGAGGACATGGTTGATGATGCTATTGAAGAGAGTGATGATGACGTTTTTGACTCCGTCTGTGCATTTTGTGATAATGGTGGTAACCTTCTATGCTGTGATGGGAGGTGCATGAGGTCCTTTCATGCAACTGAAGAGAATGATGATGAATGTTTGTCACTTGGTCTCTCGAAAGAAGAAGTAGATGTATTCCAATGTGTAAATGCAACTTGTGGTCATTTTTATCATCCTAAATGTGTTTCAAAATTGCTTCATCGTGAAAATAAAATTGCTGCTGAGGAACTTGAGAGGAAGATTGCTTCTGGAGAATCTTTTTCTTGCCCTGTGCATAAGTGTTCTGTTTGTGAACTTGGTGAAAATAAGAAAGTACACGAATTACAGTTTGCTGTTTGCCGTCGTTGCCCAAAATCCTATCACAGAAAATGCTTACCAAGGAAGATCACTTTTGAAGATTCAGACGACGATGAAACCACAACCAGGGCATGGGAAGGGCTATTACCTAATCGCATATTGATATATTGCTTAGACCATGATATCGATGAGGACATTGGGACTCCAGACAGGGACCATATTAAATTCCCTGGACTTGAAAAGAGTAAAATTCCCATCCAGCAAAAGAAAATTCCTACATTTGATACAAGAAAAGGGAAAACAATAGATTTTCGTGGGATTAGGGAAAGAGTTGTATCAAAAAAGGAAAATATGTCAGATGACCATTTTCAGGGAAAATCTGCTGCAAAAGTATCGAAATCATTTGAAAGGTCCTCATCTGAAGGGAAGGTTCTTAGCAAAGAAGCTGAGAAATCATTGTTGGGCTCTGAGTCTAGAAAAGTGAAATTAGGTAATGTTTCAAGAAAGTCTTTGAATCAAAATACAGAATCTGTCCGCATGGACATTGATAAGACTATCAAAGGGAAAAAATCCTCAGTTGTAAAGTCTGCCGCATCAACCAAGAGGTCTGATCAAAATAAGGCTTCCAAGGAGGATAACAGTGAACCGGGCAAGTCTGACACCTCTAAGCCTCTGACAAAGAAGTTGAACAGTGGGATGGTTCAATTAGATGCCGATACGGAGAGGAGGCTAATGGATTTAATGAAAAATGTTGCATCTTCAATTACTTTAGAGGACGTAGTTCAGAAACACAAAGTACCATCTACTCATGCATACTCTTTAAAAAATGTTGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGTTCAGTTGAGGCTGTTCGAGCTGCTTTACGAAAGCTTGAGGAAGGATGTAGCATTGAGGAAGCAGAAGCTGTTTGTGAGCCTGAAGTTCTTTATCACATATTTAAGTGGAAGAACAAACTGAGAGTATATCTTGCACCGTTTCTTTATGGCATGCGCTACTCCTCCTTTGGTCGTCATTTTACAAAAGTTGAGAAACTTCAGGAGATTGTTGATAGGCTTCATTGGTATATACAGAAAGGCGATACAATAGTGGATTTCTGCTGCGGTGCTAATGATTTTAGCATTTTAATGAAGAAAAAACTTGATGAGACGGGTAAACCATGCTCGTATAGAAACTTTGACTTTATTCCACCGAAGAATGTTTTCAATTTTGAGAGAAGGGATTGGATGACTGTGCAACCCAAGGAATTGCCTAAAGGATCTCAATTGATCATGGGGCTAAATCCTCCATTTGGAGTTAAAGCTGCTTTGGCAAACAAGTTCGTCGATAAGGCTCTAGAGTTTAAGCCAAAGCTCGTTATTCTTATTGTTCCTCCTGAAACCGAGAGGTTGGATAAAAAAAAGACTCCTTATGACCTGGTTTGGGAGGATAATGAGTTTTTGTCAGGAAAGTCATTTTATCTTCCTGGATCTGTCAATGCAAAAGACAAGCAGATGGATCAGTGGAATGTCAGGCCACCCGTGCTCTATTTGTGGAGTCGTCGTGACTGGGCCGATAAACACAAAGCCATAGCACAAGAGCACGACCATCTCCGCCCCCGAAAACAAGAGGAATCAGAAAAAGAGAAGACTTCTGATACCTCAAGGGTGAGGCAACCAGAGGAATCTGAAAAGGGAAAGAGTTCTGATTTGTCTAGGCTAAGGCAAAAAGAGGATTCAGGATTGGGATTAGGATCTGAAACCTCAAGGCCAAATCAATCGGAGTCGGAAAAGGGCCGAAGCTCTAAAACTTCTGATGATCATATTCATCTCAATGATACATTCCTGTTGGAATCTGTAATGCCAGCAGATGAACCAGAAGATTCCAAGAGTGGGTCGGTCTCCTGTGACGTTCATAAAAATGGGTCCATGAAAGCATCGAAGAGGGATAACGACAGAGAGAGTCTTGACAGTCGAGACCGCCGTACTAATCTGTCTCCTGAGGCTCCAAGAAAGAGGCAGCGTTTCGAAGAAATACCTAGAAGAGGTGATGGTGAGACATCAGAAGAGAGCCGACGTGATGGTAAAAGGCCTTCTCCAAATGTGAGTGATCGTAGATCCTCGTTGGCTGGTTTGTTGTCCAGTTCTGAGGTGGGAGGGATTGGACATCAGCAGTCGGGGTCGACTAAGCCTGGTTTCGATGCGAACTTCCAAGCTACTAATGAAGCAGCAGCACGAACTAGCGTAACTAACGACGTTGCTCGATATGCTGCTGTGGGAGGAATTGGACATCAGCAGTCGGGGTCGACTATGCCTGGCCAGAATGCCAACTTCCAAGCTGCTAATGAAGCAGCACGAACTAGCACAACTAACGACATTGCTCGATATGCTGCTGTGGGAGGGATTGGACATCAGCAGTTGGGGTCGACTATGCCTGGCCAGAATGCCAACTTCAGAGCTGCTTATGATGCAGCACGGACCAGCTCGACGGATGCCATTGCGAGAAAGTACAACCAGGAGCCTCATCCAATTGGGACAAGTGGATGGTCAAACAATACAAGCCTCAGTTCTGAAATTGGGTCTAGACAATTTGAGGACCGTATCATCGATCAAATGGGACGACATGCTGATGGCCTTAATTATGCACCCTACACTACTGGGCACAACGCATACATGAGGGACTTAGAAATACGATCACAACTTCGTCGTTACGGGCATATGGATACCGATAGTTTAAGAAGCAATTATCAAGCTGGACCTGAACCTGGGTATAACAACAGGATTGGGTCATTCCCACCTACGTATGGGCATCTCGGTACGCCCTCTGAACCATCTCACTGGATGAACACTTCAGCGACGCAACGATACATGCCTCGACTCGATGAGTTGAACCACACCAGATTGGTAGGAATGGGCGCTGGGCATCAGATGAATGGCAGTGGCACTATCGACCCGAGAGCACACCATCCCCCTGGTTTCAGGGGTGCGCCACAGGGGTTCGCTTCTGGTCCTCAGTACCCATATTCAAACCAGAATTCAGCTGGCTGGCTTAACGAGTAG 4026 43.67 MASSDDEAEALPLCVSNYHFVDHKEEPVSFSILPILWDGVDRLDGGQEPVFLHGTADDGLQKVYKQVTAWRFDVCGTNPEISVLSKENVWIKLQKPRKSFEDTIRTILITVQCLHVLKKNPDTPSKSLWDQLAKIFSLYEVRPSQNDLVDHMSLISETVERDDQLAKSQFLLAFLEEKPIKKRSCHEDVQCTARPSFIVDDLDDEDMVDDAIEESDDDVFDSVCAFCDNGGNLLCCDGRCMRSFHATEENDDECLSLGLSKEEVDVFQCVNATCGHFYHPKCVSKLLHRENKIAAEELERKIASGESFSCPVHKCSVCELGENKKVHELQFAVCRRCPKSYHRKCLPRKITFEDSDDDETTTRAWEGLLPNRILIYCLDHDIDEDIGTPDRDHIKFPGLEKSKIPIQQKKIPTFDTRKGKTIDFRGIRERVVSKKENMSDDHFQGKSAAKVSKSFERSSSEGKVLSKEAEKSLLGSESRKVKLGNVSRKSLNQNTESVRMDIDKTIKGKKSSVVKSAASTKRSDQNKASKEDNSEPGKSDTSKPLTKKLNSGMVQLDADTERRLMDLMKNVASSITLEDVVQKHKVPSTHAYSLKNVVDKTIKMGKLEGSVEAVRAALRKLEEGCSIEEAEAVCEPEVLYHIFKWKNKLRVYLAPFLYGMRYSSFGRHFTKVEKLQEIVDRLHWYIQKGDTIVDFCCGANDFSILMKKKLDETGKPCSYRNFDFIPPKNVFNFERRDWMTVQPKELPKGSQLIMGLNPPFGVKAALANKFVDKALEFKPKLVILIVPPETERLDKKKTPYDLVWEDNEFLSGKSFYLPGSVNAKDKQMDQWNVRPPVLYLWSRRDWADKHKAIAQEHDHLRPRKQEESEKEKTSDTSRVRQPEESEKGKSSDLSRLRQKEDSGLGLGSETSRPNQSESEKGRSSKTSDDHIHLNDTFLLESVMPADEPEDSKSGSVSCDVHKNGSMKASKRDNDRESLDSRDRRTNLSPEAPRKRQRFEEIPRRGDGETSEESRRDGKRPSPNVSDRRSSLAGLLSSSEVGGIGHQQSGSTKPGFDANFQATNEAAARTSVTNDVARYAAVGGIGHQQSGSTMPGQNANFQAANEAARTSTTNDIARYAAVGGIGHQQLGSTMPGQNANFRAAYDAARTSSTDAIARKYNQEPHPIGTSGWSNNTSLSSEIGSRQFEDRIIDQMGRHADGLNYAPYTTGHNAYMRDLEIRSQLRRYGHMDTDSLRSNYQAGPEPGYNNRIGSFPPTYGHLGTPSEPSHWMNTSATQRYMPRLDELNHTRLVGMGAGHQMNGSGTIDPRAHHPPGFRGAPQGFASGPQYPYSNQNSAGWLNE 1341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5086275 5104203 - Cp4.1LG02g00740.1 Cpe02g00796 464745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 915 930 - -
Cpe02g00796 1341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 336 IPR013083 -
Cpe02g00796 1341 SMART PHD_3 314 381 IPR001965 -
Cpe02g00796 1341 SMART PHD_3 223 273 IPR001965 -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 945 1057 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 855 930 - -
Cpe02g00796 1341 PANTHER ENHANCED DOWNY MILDEW PROTEIN 265 1336 - -
Cpe02g00796 1341 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 265 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 964 1023 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 524 542 - -
Cpe02g00796 1341 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 265 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 485 499 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 1325 1341 - -
Cpe02g00796 1341 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 265 1336 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 456 477 - -
Cpe02g00796 1341 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 136 IPR022702 -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 435 552 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 855 899 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 1024 1057 - -
Cpe02g00796 1341 CDD PHD3_NSD 315 347 - -
Cpe02g00796 1341 MobiDBLite consensus disorder prediction 1301 1341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00796 - - - cmos:111445988 2597.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00796 Cpe_Chr02 FPKM 3.888518 7.249164 5.793281 5.770961 3.997857 3.998095 3.960969 7.690237 8.420672 9.050022