Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00807 ATGGGTTTCTTTGATTTCTCTATGAACAGCTTAACTAACTTATTCTTTTATGACCCTTCTTCCCCTGTGGGCTCTGCTGCTCACTTTCTCCTTGAACCCAATGTAGCTCATGGCCTGTCTGGTTTAGCTCACCTAGTTTTGTTTCTTGTTCTTTTCTTCTCATGGGTGTGCTTAAAGTTGAAGGCAGAGTGTGGGGAACGTCGAAGAGAGACGAGGTGTTTGTATGATAAGGGAACTTACATATGCTGCCTCGTTATCTCTGTTTTTAGTCTTGTTTTCTTTTCTCTTGACTGCTTCTACTGGTATAGAAATGGGTGGTCTGAGGAACATATGGTGACCCTTTTGGATTTTGGGTTGAAAGCAATTGTATGGGGCGTTGTTTCCTTTTGTTTACACTCCCAAATTCTCAAATCAGGAAAATCTAAGTTTGCAATTCATTTGAGAGTTTGGTGGGTTTCATACTTTGCTGTCTCTTGTTACTGCCTTGCTGTGGACTTGGCTCTTTATAGACAAGCCCATTCGTTGCCTATCAGATACTTAGTATCTGATATTATGTCGATCGTCTCTGGTTTATTGATCATGTATGTTGGGTTCTTTGGGAAGAGTGTGAGTGAACAAAACCCACTTGAAGAACATCTTTTAAATGGAGAATCAAGCTATACTTCTCTCAGTAATGGCGACGTCGAGCTGAAGAACTGCAGAGGAGATGAAACTGTGACCCCTTATGAGACTGCTGGAATATGGAGCATTCTTTCATTCTCTTGGATGGGTCCTCTGATTTCAACTGGAAGTAAAAAGGCGTTAGACCTTGAGGATATTCCTCAACTTGCTAGCCATGATGCTGTTTCTGGGACCTTTCAGATTCTTAGAAACAAGCTTGAGTCTGAATGTGGAAGCATCAATAGACTCACCACGCTTTCTCTGATTAAGGGTTTGCTTTACTCAGCTTGGAAAGAAATACTTCTATCCGCTTCTTTTGCATTAGTTTACACATTGGCTACTTATGTTGGCCCCTATCTTATTGACACTTTTGTTCAATATCTCAATGGTCGTCGAGATTTTGAAAATGAGGGCTACGTTTTGGTTTGTGTATTCTTTCTGGCGAAACTCGTGGAGTGTCTTGCAATGAGGCATTGGTTCTTTAGGGTACAACAAATCGGATTGAGGGTTCGGGCAGCATTGGTTGCAATGATCTACAACAAGGGTCTGACTCTTTCTTGCCAATCAAGGCAACAGCACACAAGTGGGGAGATTATCAACTTCATGACTGTAGATGCGGAGAGGGTCGGTGAGTTCAGTTGGTATATGCATGATGTTTGGCTGGTGTTTTTTCAAGTTGTACTGGCCCTGTTGGTTTTGTATAAGAATCTTGGTCTTGCTTCCATTGCTGCTTTTGTTGCAACCATAGCTATTATGTTGGTAAATGTTCCATTGGGAAAGTTGCAGGAGAAGTTTCAGGACAAGATTATGGAATCAAAAGATGCTAGGATGAAGGCAACATCTGAAATCTTGAGGAATATGAGGATTCTTAAGCTTCAAGGATGGGAAATGAAGTTTCTATCTAAGATATCAGAACTTAGAAACATTGAGGCGGGATGGTTAAAGAGGTTTCTTTATACATTGTCGGTTACCACGTTCGTCTTTTGGGGTGCCCCGACGTTCGTGTCGGTGGTCACGTTCGGGACTTGTATGCTTCTAGGGATCCCATTAGAATCAGGGAAAGTCTTATCTGCCCTTGCAACATTTCGGATTCTTCAAGAACCAATTTACAATCTTCCTGATACAATATCAATGGTGGTCCAAACCAAAGTTTCACTTGATAGAATAGTGTCATTCCTTCGTCTTGACGACTTGCAGTCTGATATTGTAGAGAGGCTTCCAAGTGGTAGTTCTACTACAGCAGTTGAGATTGTCAATGGAAGCTTTTCTTGGGATTCGTCTTCGTCGAATCTGACATTGCGTGATATCAATTTCAAAGTGGAACATGGCATGAGAGTTGCTGTTTGTGGTTCTGTAGGCTCAGGCAAGTCCAGCTTGCTATCATGCATCCTGGGGGAGATACCTAAAATGTCTGGGAACCTGACGGTGTGCGGGACTAAGGCCTACGTAGCTCAGTCGCCATGGATACAGAGTGGGAAGATTGAAGAGAACATACTCTTTAGCAAAGAGATGAACAGAGAAAGGTACAAAAGAGTTCTTGAAGCATGTTGTCTAGAAAAGGACCTCGAAATTCTTGCATTTGGCGACCAGACGGTAATAGGAGAAAGAGGAATCAATTTAAGTGGTGGACAGAAGCAAAGAATCCAAATTGCTCGTGCCTTATACCAAGAAGCTGATATTTACTTGTTTGATGATCCTTTTAGTGCAGTTGATGCTCATACAGGTTCACACCTCTTCAAGGAATGTCTGCTTGGTGTTCTGAGTTCAAAAACAGTCATTTATGTAACTCATCAAGTAGAATTTTTACCTGCTGCAGATCTTATCTTGGTAATGAAAGATGGAAAGATCACTCAAGCTGGAAAGTACGATGAAATTCTTCGTTCTGGAACCGACTTTATGGCACTCGTTGGTGCACACGAGGAAGCATTATCAGCCATTAATTCTGTTGGAGCTTCTGCTAGCAAGGAAGATGGGTCTATGCTTAGTACCAATGGCATTACTGATGAGGAAGACAAAGGAGACATACAAGATGGGAAGGCTGTTGATGCCACTGAGTCAAAAGGGCAGCTTGTACAAGCAGAAGAGAGAGAGAAAGGAAGTGTTGGGTTCTCAGTTTACTGGAAATATATCACTTCTGCTTATGGTGGAGCTCTTGTGCCTCTTATATTGCTTGGTCAGATTCTCTTTCAGATTCTTCAAATTGGAAGTAATTATTGGATGGCATGGGCTACTCCTGTTTCGAAGGATACGGAGCCTCCTGTTTCCACCTCTCGATTGATCATCGTCTACGTTGCGTTGGCCTTTGGAAGCTCTTTGTGTATCCTCATGAGATCGACCCTTCTCGTGACAGCTGGTTTTAAAGCAGCAACTGAACTCTTCGCCTCCACAGACCAAAGTGCCATCGATATGGATATACCTTTCCGAGTTGGGGCCTTCTGCTTCAATGCGATTCAGCTCGTGGGAATTATTGCTGTAATGTCTCAAGTTGCATGGCAAGTTTTCATTATCTTTATCCCTGTGATGGCTCTGTGCATCTGGTATGAGCAATATTACATTTCAGCAGCACGAGAGCTGGCACGGTTGATCGGAGTATGCAAAGCTCCAGTTATACAACTTTTCTCCGAAACCATTTCTGGATCAACAACTATTAGGAGCTTTGAACAAGAGTCCAGATTCCAGGACACCAATATGAAACTGACCGATGCATATTCTCGTCCCAAGTTCCATAACGCTGCAGCGATGGAATGGCTCTGCTTCCGTCTCGATATGTTGTCGTCCATTACATTTGCCTCCTCCTTGATTTTCTTAATATCTATCCCTGTGGGACTCATTGATCCAGGCATTGCTGGCTTGTCAGTAACATATGGACTGAACCTAAATATGTTGCAAGCTTGGCTAGTATGGAACCTTTGTAGTATGGAGAACAAAATCATTTCGGTTGAGAGAATATTTCAATATACTTCAATTCCTAGTGAGCCACCTCTAGTCATTGAGGAAAACCGACCAGATTGTAGCTGGCCAGCATTTGGAGAAGTTGAACTTCGTGATCTGCAGGTTCGTTACGCACCGCAACTGCCTCTTGTGTTGCGCGGTATTACATGTACTTTCCCAGGAGGGAAGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGCAAATCAACTCTAATACAGACACTTTTCCGAATAGTTGATCCTGTAGCAGGTCATATTGTGATTGATAACATCGACATAACGACGATCGGACTTCATGATTTGCGGTCGAAACTCAGTATCATCCCGCAGGATCCAACCATGTTTGAAGGCACCGTGCGGAGCAACCTCGATCCACTTGAAGAATATGCAGACGAAGACATTTGGGAGGCATTGGATAAATGCCAACTTGGAGATGAAGTGAGAAAAAAGGAAGGAAAGTTGGATTCTGCAGTTACTGAGAATGGAGAGAACTGGAGCATGGGTCAGAGGCAGCTCGTGTGCCTCGGTCGGGTGCTGCTTAAGAAGAGTAAGGTGCTGGTCCTTGACGAAGCAACTGCATCAGTCGATACAGCTACAGATAACTTGATTCAACAGACTCTCCGACAACATTTTTCCGACTGTACAGTCATTACGATTGCACATCGGATAACTTCTGTCCTTCATAGTGACATGGTTTTGCTTCTAAGTCACGGACTCATTGAAGAGTATGACACCCCTACAAGATTGCTAGAAGATAAGTCATCCTCATTTTCTCAGTTAGTTGCAGAGTACACACATAGGTCGGGTTCTCGATAA 4428 43.04 MGFFDFSMNSLTNLFFYDPSSPVGSAAHFLLEPNVAHGLSGLAHLVLFLVLFFSWVCLKLKAECGERRRETRCLYDKGTYICCLVISVFSLVFFSLDCFYWYRNGWSEEHMVTLLDFGLKAIVWGVVSFCLHSQILKSGKSKFAIHLRVWWVSYFAVSCYCLAVDLALYRQAHSLPIRYLVSDIMSIVSGLLIMYVGFFGKSVSEQNPLEEHLLNGESSYTSLSNGDVELKNCRGDETVTPYETAGIWSILSFSWMGPLISTGSKKALDLEDIPQLASHDAVSGTFQILRNKLESECGSINRLTTLSLIKGLLYSAWKEILLSASFALVYTLATYVGPYLIDTFVQYLNGRRDFENEGYVLVCVFFLAKLVECLAMRHWFFRVQQIGLRVRAALVAMIYNKGLTLSCQSRQQHTSGEIINFMTVDAERVGEFSWYMHDVWLVFFQVVLALLVLYKNLGLASIAAFVATIAIMLVNVPLGKLQEKFQDKIMESKDARMKATSEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKRFLYTLSVTTFVFWGAPTFVSVVTFGTCMLLGIPLESGKVLSALATFRILQEPIYNLPDTISMVVQTKVSLDRIVSFLRLDDLQSDIVERLPSGSSTTAVEIVNGSFSWDSSSSNLTLRDINFKVEHGMRVAVCGSVGSGKSSLLSCILGEIPKMSGNLTVCGTKAYVAQSPWIQSGKIEENILFSKEMNRERYKRVLEACCLEKDLEILAFGDQTVIGERGINLSGGQKQRIQIARALYQEADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYDEILRSGTDFMALVGAHEEALSAINSVGASASKEDGSMLSTNGITDEEDKGDIQDGKAVDATESKGQLVQAEEREKGSVGFSVYWKYITSAYGGALVPLILLGQILFQILQIGSNYWMAWATPVSKDTEPPVSTSRLIIVYVALAFGSSLCILMRSTLLVTAGFKAATELFASTDQSAIDMDIPFRVGAFCFNAIQLVGIIAVMSQVAWQVFIIFIPVMALCIWYEQYYISAARELARLIGVCKAPVIQLFSETISGSTTIRSFEQESRFQDTNMKLTDAYSRPKFHNAAAMEWLCFRLDMLSSITFASSLIFLISIPVGLIDPGIAGLSVTYGLNLNMLQAWLVWNLCSMENKIISVERIFQYTSIPSEPPLVIEENRPDCSWPAFGEVELRDLQVRYAPQLPLVLRGITCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVDPVAGHIVIDNIDITTIGLHDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWEALDKCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLHSDMVLLLSHGLIEEYDTPTRLLEDKSSSFSQLVAEYTHRSGSR 1475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5168384 5174437 + Cp4.1LG02g00680.1 Cpe02g00807 464756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00807 1475 Pfam ABC transporter 653 787 IPR003439 GO:0005524
Cpe02g00807 1475 ProSitePatterns ABC transporters family signature. 760 774 IPR017871 GO:0005524
Cpe02g00807 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 856 IPR027417 -
Cpe02g00807 1475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1234 1466 IPR003439 GO:0005524
Cpe02g00807 1475 Gene3D ABC transporter type 1, transmembrane domain 903 1213 IPR036640 GO:0005524|GO:0016021
Cpe02g00807 1475 Gene3D ABC transporter type 1, transmembrane domain 292 617 IPR036640 GO:0005524|GO:0016021
Cpe02g00807 1475 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 115 1474 - -
Cpe02g00807 1475 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 115 1474 - -
Cpe02g00807 1475 SMART AAA_5 662 835 IPR003593 -
Cpe02g00807 1475 SMART AAA_5 1258 1443 IPR003593 -
Cpe02g00807 1475 Pfam ABC transporter 1249 1397 IPR003439 GO:0005524
Cpe02g00807 1475 Gene3D - 618 877 IPR027417 -
Cpe02g00807 1475 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 321 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe02g00807 1475 CDD ABC_6TM_ABCC_D2 939 1207 IPR044726 GO:0140359
Cpe02g00807 1475 CDD ABCC_MRP_domain1 650 835 - -
Cpe02g00807 1475 CDD ABCC_MRP_domain2 1230 1450 - -
Cpe02g00807 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1458 IPR027417 -
Cpe02g00807 1475 SUPERFAMILY ABC transporter transmembrane region 939 1213 IPR036640 GO:0005524|GO:0016021
Cpe02g00807 1475 Pfam ABC transporter transmembrane region 1017 1156 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe02g00807 1475 Pfam ABC transporter transmembrane region 322 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe02g00807 1475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 858 IPR003439 GO:0005524
Cpe02g00807 1475 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 941 1195 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe02g00807 1475 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Cpe02g00807 1475 SUPERFAMILY ABC transporter transmembrane region 311 613 IPR036640 GO:0005524|GO:0016021
Cpe02g00807 1475 Gene3D - 1215 1468 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00807 - - K05666 cmax:111480502 2781.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00807 Cpe-Chr2:5168384 Cpe17g00963 Cpe-Chr17:7350788 0 dispersed
Cpe12g00939 Cpe-Chr12:8011321 Cpe02g00807 Cpe-Chr2:5168384 0 dispersed
Cpe17g00507 Cpe-Chr17:4263491 Cpe02g00807 Cpe-Chr2:5168384 0 transposed
Cpe02g00807 Cpe-Chr2:5168384 Cpe06g00799 Cpe-Chr6:5118047 3.02E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g632 . . . . . . . . . . . . . . . . Cpe02g00807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00991 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00807 Cpe_Chr02 FPKM 24.54224 23.089777 3.555283 4.308799 12.274693 11.784587 11.535635 1.541572 1.783393 1.064009