Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00816 ATGGCGGGTTTAGCTATTGTTTTGGATCTATTACGGAAAAATTCCGTTCTTAATACACAGCAGAGTCTCCACTCCTATGGCGCTTTCTCGGCCGCCGCCGCTGCCGCTGCCGGAACCCCTTTCGCGTACAGAGCTTTCATAGGTAATTACAGGATTCCCATAGCTCATTGCGATGCTGGTGTGGATGTGACTGAGGATAACTACTTCTCAAATCTACAGAGTGCATCAACGAAAATCTTCGAGCACGAGTCTCTTCAATACGGTACGAAGGAGTACAACCTCGAGTTAAAGCCACTATTCTCAGCTTTCCAATGGAGGATGCTTGGTATGACAACCTTGAGGTCGTTTTTGATGTTTTATTTGCCTCTTTTGGAGCCTCATGCCAAGTTGGAAGACGAGGACGATGACGATTTTCTAGATGATGCTCAAGAAGAGAAGCATGTCGATCTAGTTTCGCCCTTTAAAAAGTCAATCAAACAAATCTTTCGTGAGACTACCGTCGTGACGACGAGACGTGTTTTGGAACGAATTGCTGTCCACTATGCTTCGCAGAGAATAGCATGGAAGCTTCTGAAAGATGTTCCCAAATCTGCTGTTCGTAAGGCTGGACGAGGACTGTCTACTCCGATCTACTTCTTCCGAGTTAGTAGGACGACTTTCAGAGGACACGCTCTAGGAGTTGCAGCTTCATGGCTTGTTCAAGTCGGTATCGAAATCTACCGATACATATCAGAGAAAATAAAATCTGAAGAAGACAATATCGTTAACAAGACCGAGAAACTAGTACTTCTAAGGAAGAAGATTGCAAGCGCTACTCTTCGGTGTAGCTCGTCGCTAGTTTTTGCTTCCATTGGAGCAGGTATCGGCGCCACGCTCTTCCGCCCATCAGCTGGCCAGTGGATCGGATGTGCTGTGGGGGACTTGGCAGGGCCTGTTATTGTGACAGTTTGTCTGGAGAAAGGTTTGAACTTGGATCTTTAG 981 46.48 MAGLAIVLDLLRKNSVLNTQQSLHSYGAFSAAAAAAAGTPFAYRAFIGNYRIPIAHCDAGVDVTEDNYFSNLQSASTKIFEHESLQYGTKEYNLELKPLFSAFQWRMLGMTTLRSFLMFYLPLLEPHAKLEDEDDDDFLDDAQEEKHVDLVSPFKKSIKQIFRETTVVTTRRVLERIAVHYASQRIAWKLLKDVPKSAVRKAGRGLSTPIYFFRVSRTTFRGHALGVAASWLVQVGIEIYRYISEKIKSEEDNIVNKTEKLVLLRKKIASATLRCSSSLVFASIGAGIGATLFRPSAGQWIGCAVGDLAGPVIVTVCLEKGLNLDL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5222923 5226510 + Cp4.1LG02g00670.1 Cpe02g00816 464765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00816 326 Coils Coil 247 267 - -
Cpe02g00816 326 PANTHER ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE 1 325 - -
Cpe02g00816 326 PANTHER ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE 1 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00816 - - - mcha:111010572 516.538
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00816 Cpe06g00808 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00816 Cpe-Chr2:5222923 Cpe06g00808 Cpe-Chr6:5169592 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g640 . . Bda07g00401 Bda09g00433 . Bpe08g01098 . . . . Cma01g01082 Cma09g00999 Car01g00957 Car09g00911 Sed07g2739 Cpe06g00808 Cpe02g00816 Bhi09g01747 Tan01g3179 Cmetu01g2567 . . Mch11g1256 . . . . . . . . . . . . Lsi02g01844 Csa07g00941 . . . . . . Bpe11g00581 . Bma07g01252 Bma14g00173 . Cmo01g01128 Cmo09g01000 . . . . . . . . . . . . . Cla09g02061 Cam09g2150 Cec09g2215 . . . . . . Chy01g01167 Cme01g00935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003969 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00816 Cpe_Chr02 FPKM 49.843536 59.830532 40.052032 40.744774 118.237373 150.866638 117.348022 33.738434 36.665554 32.23336