Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00820 ATGGACCCGTCGTCAGTGCACAACACTCCTCCAGTTGAAGAAGATGAGTGGGACACCGATGGGTTCGTGATTCCGAACTTGGGGATCGAAGGGACGGACCAAACTAAACTTGGCTCTCCAGAAGTAGAAATCCAAGAACCTCCTCCAAAGGCTAAAGAAGAGACGACGATCTATCTCGGCCCACATGGCGCGCCACCATCACAGTCAAAACAGCAGTATTCGAACCCCGCCAATCGTAAGCAACGGTTGAAGCAGAAATTGAAGGAAGCAGACCGGAGGACCACAACGGGACGGGAGAACAAGCTGGAGAATTTGAGAGAGCTTGTAGGTGGTGGAAGATCAAGCATGAATATAGCAAAAGGTTCTTCTAGGGACTGGCTTGATCCACATTGCCATGAGGCTCAGTTCCAGAAGTAA 417 50.36 MDPSSVHNTPPVEEDEWDTDGFVIPNLGIEGTDQTKLGSPEVEIQEPPPKAKEETTIYLGPHGAPPSQSKQQYSNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGRSSMNIAKGSSRDWLDPHCHEAQFQK 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5250977 5254104 - Cp4.1LG02g00400.1 Cpe02g00820 464769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00820 138 MobiDBLite consensus disorder prediction 82 106 - -
Cpe02g00820 138 PANTHER BNAA10G09820D PROTEIN 1 138 - -
Cpe02g00820 138 MobiDBLite consensus disorder prediction 65 80 - -
Cpe02g00820 138 PANTHER BNAA10G09820D PROTEIN 1 138 - -
Cpe02g00820 138 MobiDBLite consensus disorder prediction 1 138 - -
Cpe02g00820 138 Coils Coil 134 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00820 - - - csv:101216518 248.054
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00820 Cpe06g00816 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00820 Cpe-Chr2:5250977 Cpe06g00816 Cpe-Chr6:5213960 2.50E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g656 . . . . . . . . . . Cma01g01078 Cma09g01006 Car01g00953 Car09g00918 Sed07g2746 Cpe06g00816 Cpe02g00820 Bhi09g01757 Tan01g3187 Cmetu01g0523 . . Mch11g1264 . . . . . . . . . . . . Lsi02g01838 Csa07g00915 . . . . . . Bpe11g00585 . . Bma14g00685 . Cmo01g01124 Cmo09g01009 . . . . . . . . . . . . . Cla09g02068 Cam09g2157 Cec09g2222 . . . . . . Chy01g01151 Cme01g00920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006979 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00820 Cpe_Chr02 FPKM 66.473854 81.984482 71.825745 76.078293 97.482491 81.833847 97.892593 91.402573 87.998314 90.566666