Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00831 ATGCCTGCCGCCAAGTTCAACAAGAAGAAAGCTGTGAAACGAGACGACCCACAATCGAAAAGGAAGAAGAAGGACGAGCTCTTCACGCCTAAACGTGGAAAGAAAGAGGAGGAGAATGATTCTGACCTCTCTGATGCTCTGGATGTGGAAGAAGTAGAGGATGGAATGCTTGATGCTGATGAACAAGGATCTGGGTCTGGTTCTGGTTCTGAAGTTTCTTCTGATGGTGATGATCCCTTGGCTGATGATTTCTTCCATGGAAGCGACGAAGAGAATGTTTCTCGTTCTGTTTCTGGTTCGGATTCTGATGAATCTGACATCGAAGAGAAGTCGAGAGCTATTGATGAAGAAAGAGCGAGGGAAGAAAAAGATGCAGCTGATGAAATGCAGCTCAATATTAAAGAAGAATCCGATGAGTTCAGATTACCAACCAAGGAGGAACTTGAAGAAGAGGCGCTTAGACCTCCTGACATTTCAAATTTACAAAGGCGGATAAGAGAAATTGTTCGAGTTCTTTCAAATTTCAAGGCTTTGAGGCAAGAGGGGGCGACCCGGAAGGATTATGTTGAACAACTTAAGAAAGATATTGGTTCATACTATGGTTATAACGAATTTCTTACTGGGGTTCTAGTTGAGTTGTTTCCTGTTGTCGAGCTAATGGAACTTATCGAAGCTTTTGAAAAGCCGAGACCAATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGTGATCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTTCCTGTTATGGCCCTTGCTCCTCAAGAAAAAGAACGAATCGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCAGCACTCATGAAAAATAGTGGAATAATATTTGCTAATGAGATGAAAGTACCAAGATTGAAGTCACTTACTGCGAATTTACATCGAATGGGAGTGACAAATACTGTTGTCTGTAACTACGATGGGAAGGAGCTCCCGAAAGTGTTGGGGATGAATACGGCCGATAGAGTTCTATTAGATGCCCCTTGTAGTGGATCTGGAGTTGTATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCCTTGAAGAAATCCAGAAATGTGCTCAGTTGCAGAAGCAACTTATACTTGCTGCAATTGACATGGTTGATGCAAATTCAAAATCCGGGGGCTATATTGTTTACTCCACCTGTTCCATAATGGTCGACGAGAATGAAGCAGTTGTTGACTATGCACTAAAGAAGAGGAATGTCAAACTTGTTCCATGTGGCCTTGATTTCGGACGTCCCGGGTTTATCCGGTTTAGGGAAAAACGTTTTCACCCATCTTTAGAGAAGACAAGACGTTTCTACCCCCATGTCCATAACATGGATGGCTTTTTTGTAGCAAAGTTGAAGAAAATGAGCAACAAGATACCAACTGCTCAATCTTCAGAAGCATTGGAAGAAGAGGCAGTGGAAGAGGAGGATTTTGAGGCAGAGAAGAAGAGCGCAAATGAGAAGAACGATGGCGAATGCCTTCACCCACAAGTGAACGATGGTAAAAAGAGGAAGAAGGTCGTTTCGGAAAAACACGAAGTTGAAAATGGCGAAGAATCAAAGCCGGGTGTGGAAAAGAGGAAGAAGAGAAAATTTCCCTCGAGAGAGGAAATCTCAAAAGCTAGGGAAGAAAAGCGAGAAGCTTTGAGGGAAAAGAAAGCTGGTGGGAGCAAGAAATAA 1848 42.75 MPAAKFNKKKAVKRDDPQSKRKKKDELFTPKRGKKEEENDSDLSDALDVEEVEDGMLDADEQGSGSGSGSEVSSDGDDPLADDFFHGSDEENVSRSVSGSDSDESDIEEKSRAIDEERAREEKDAADEMQLNIKEESDEFRLPTKEELEEEALRPPDISNLQRRIREIVRVLSNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLTGVLVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGMNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAQLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVDENEAVVDYALKKRNVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPTAQSSEALEEEAVEEEDFEAEKKSANEKNDGECLHPQVNDGKKRKKVVSEKHEVENGEESKPGVEKRKKRKFPSREEISKAREEKREALREKKAGGSKK 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5313319 5318759 - Cp4.1LG02g00440.1 Cpe02g00831 464780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00831 615 Gene3D Sun protein; domain 3 188 295 - -
Cpe02g00831 615 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 196 510 IPR029063 -
Cpe02g00831 615 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 234 510 IPR011023 GO:0003723|GO:0006396|GO:0008757
Cpe02g00831 615 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 185 205 IPR023273 GO:0008168
Cpe02g00831 615 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 218 230 IPR023273 GO:0008168
Cpe02g00831 615 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 241 254 IPR023273 GO:0008168
Cpe02g00831 615 Coils Coil 524 544 - -
Cpe02g00831 615 MobiDBLite consensus disorder prediction 8 41 - -
Cpe02g00831 615 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 222 511 IPR001678 GO:0008168
Cpe02g00831 615 PRINTS RNA (C5-cytosine) methyltransferase signature 282 296 IPR023267 GO:0001510
Cpe02g00831 615 PRINTS RNA (C5-cytosine) methyltransferase signature 311 321 IPR023267 GO:0001510
Cpe02g00831 615 PRINTS RNA (C5-cytosine) methyltransferase signature 379 391 IPR023267 GO:0001510
Cpe02g00831 615 PRINTS RNA (C5-cytosine) methyltransferase signature 433 449 IPR023267 GO:0001510
Cpe02g00831 615 PRINTS RNA (C5-cytosine) methyltransferase signature 493 510 IPR023267 GO:0001510
Cpe02g00831 615 Coils Coil 119 139 - -
Cpe02g00831 615 Pfam 16S rRNA methyltransferase RsmB/F 299 509 IPR001678 GO:0008168
Cpe02g00831 615 MobiDBLite consensus disorder prediction 534 615 - -
Cpe02g00831 615 MobiDBLite consensus disorder prediction 42 58 - -
Cpe02g00831 615 MobiDBLite consensus disorder prediction 1 127 - -
Cpe02g00831 615 Gene3D Vaccinia Virus protein VP39 298 603 IPR029063 -
Cpe02g00831 615 MobiDBLite consensus disorder prediction 517 615 - -
Cpe02g00831 615 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 43 590 IPR023267 GO:0001510
Cpe02g00831 615 PANTHER BNACNNG49010D PROTEIN 43 590 - -
Cpe02g00831 615 MobiDBLite consensus disorder prediction 101 127 - -
Cpe02g00831 615 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 218 295 IPR031341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00831 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 1011.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00831 Cpe06g00828 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00831 Cpe-Chr2:5313319 Cpe06g00251 Cpe-Chr6:1340209 5.07E-17 dispersed
Cpe02g00617 Cpe-Chr2:3741695 Cpe02g00831 Cpe-Chr2:5313319 2.57E-08 transposed
Cpe02g00831 Cpe-Chr2:5313319 Cpe06g00828 Cpe-Chr6:5316440 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00831 Cpe_Chr02 FPKM 8.466847 7.521775 3.207186 3.666959 16.669615 15.735982 20.594912 2.363137 2.208172 2.346149