Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00838 ATGCCGCAGGAATTCAGTTTTCGGAGTTCGATTTTGACGTCTCCGAACAAGAATATGAGAGGATTGAAGGCTCTGGTTCCGAATTGTAACGAGATTACTTCTAATTCCGCGATTTCTGAGGAAGTTATCAACGACGATGAATTGGCTCAGCGGAAAGCGGAAGAAGCTGCATTGAGGAGGAATCAAGCAGTGGAATGGCTACGCCAAATGGATCATGGAGCATTAGGAGTACTATCGAAGGAGCCCTCAGAAGAAGAGTTCTGTCTCGCTCTTCGCAATGGCCTTATCCTCTGCATCGTCCTCAACAAAGTAAACCCTGGTGTTGTTCCCAAGTATTTTGAAAACATGAGGAACTTCTTGGAGGCAGTTAAAAACATGAAGCTCTTGACATTCGAAGCTTCCGACTTGGAAAAGGGAGGTACTTCTAGTAAAGTTGTGGAGTGTATTCTTTGCTTGAAAGGATATTATGAGTGGAAACAAGCTGGTGGGATTGGCGTTTGGAGATATGGAGGAACTGTACGGATCACATCTCTTGCCAAAAGTTCACCATCCGTGACTGGAACTGAGAGTACAGACGAGTCGGATTCGTCTCGGTTCGAGCAGCTACAAGACTTCCTCCATCTTTCTAATGAAGTTTCAGTTGAAGAATCAAGAACTTGCAGTGCTCTTGCTTTTCTTTTTGATCGTTTTGGACTCAAACTTCTACAAGCTTACCTTAAAGAGACTAACGAAGTTGAAGATTGGCCTTTAAATGCAATGGTAATTGATGCACTACTTAACAAGGTTGTCAAGGATTTCTCTGCACTGCTCATGTCTCAAGGCACTCAGCTTGGGCTCTTTCTGAAAAAGATGTTGAAAAGTGACTTAAGTTCATTATCAAAATCTGAATTCATAGAAGCAATTTCTCGATACATCAGTCAAAGAGCTAATATGGCATCAAGTGATATCTCCAAATTCTGTGTTTGTGGAGGAAAACGTGAGGAGCTAAACTCAGCATTTCAAGAAACCAAGCTTGAAGTTAAACACATACAGTCCCAATGGAACGAGGAAGTTGAAAGGCTTGAACATCATCTCAAGGGCCTTGAAATGGCTTCCTCTTCTTACCACAAGGTCTTGGAAGAGAATCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGAACAATAAGGGTATACTGTAGAGTGAGGCCTTTCTTGCCAGGACAAGCCAACCAGCATTCTACAGTTGATTATATTGGAGAAAATGGGAACATAATGATTGGAAGAAGAGTATTTTCCTTCAATAAAGTCTATGGAACTAATGTTACCCAAGATGTTCTTCATTTGATGAACATTGGCCACAATAATCGAGCTATCGGTGCTACGGCGTTAAATGAGCGAAGTAGTCGGTCACATAGTGTTTTAATAGTTCATGTTCTTGGGAAAGATTTGGTGTCTGGATCCATCACTAGGGGGTGTCTTCATCTAGTTGATCTAGCTGGTAGTGAAAGAGTGGACAAATCTGAAGCTGTTGGTGACAGATTAAAGGAAGCACAACATATAAACAAATCCCTCTCTGCACTTGGAGATGTGATATCTGCTCTTGCACAAAAGAGTGCTCATATCCCTTACAGAAATAGCAAACTCACTCAACTCCTTCAAGATTCTTTAGGTGGACAAGCTAAGACATTGATGTTTGTACACATAAATTCCGAGGTCGATGCACTCGGAGAGACGATTAGCACGCTTAAGTTTGCTGAGAGAGTTGCCTCCATTGAATTAGGTGCAGCTCGTTGTAACAAAGAAAACAGTCAAATCCGAGAGCTTAAAGACGAGATATCGAATCTTAAATCAGCTTTAGAGATGAAGGATACAGAGCTTGAACAGCTAAAGGGTGGCAATGCTCGAGCTCTTGGACACAATCAGAAGCCAAGAATTGCCTCGCCCTTTCGTGTTCTAAGACATGGAAAGCAAAGAAGGTCAAGATTTCCCTCAACATTCACAGAGAAAGATGCAATAAAAATGAGATTGTTAGGTGAAGAGAGATCAACAAGTTCAAGCTCTGGAAATCCAAGGTCACCATCTCCACCAGTTAGGAGATCAATATCAACAGATAGAGGTGCCCTTTTAAGAAGCAAGGTTAAGACAGAGACGAACGAGAACCAACCAATAGCAAAGCCTTCATCATTTCTTGATATCCAAAAAACAGCAATGGGCTCAACAAAGAAGAAGCAACTAGTTTGCCAAGAAAAAAATGAGCAAGATTCAAGAAAGAGTGACTTCTCTGAGATGGAGAATGAGCAGTTTCTTTGGGGAATGCCTCTTGGTGGTGCTTTGAAGGTGAAAAAAGCTTGTCACAACTTTCCGAGGAACTCTCAGAATCTGGAACCACCAAGAGTACAAGTTGGGGCTGTTGAAACTCTGCTAAGAACAAGTAGAGTTGAGAATGGGAGTCGCAATCAAAACAAAGTCAGCAATGGATCAATGCCTGAATTTGGAAGAAGCAGATCTACAACTCGCAGGAAATGA 2508 41.71 MPQEFSFRSSILTSPNKNMRGLKALVPNCNEITSNSAISEEVINDDELAQRKAEEAALRRNQAVEWLRQMDHGALGVLSKEPSEEEFCLALRNGLILCIVLNKVNPGVVPKYFENMRNFLEAVKNMKLLTFEASDLEKGGTSSKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSLAKSSPSVTGTESTDESDSSRFEQLQDFLHLSNEVSVEESRTCSALAFLFDRFGLKLLQAYLKETNEVEDWPLNAMVIDALLNKVVKDFSALLMSQGTQLGLFLKKMLKSDLSSLSKSEFIEAISRYISQRANMASSDISKFCVCGGKREELNSAFQETKLEVKHIQSQWNEEVERLEHHLKGLEMASSSYHKVLEENRILYNQVQDLKGTIRVYCRVRPFLPGQANQHSTVDYIGENGNIMIGRRVFSFNKVYGTNVTQDVLHLMNIGHNNRAIGATALNERSSRSHSVLIVHVLGKDLVSGSITRGCLHLVDLAGSERVDKSEAVGDRLKEAQHINKSLSALGDVISALAQKSAHIPYRNSKLTQLLQDSLGGQAKTLMFVHINSEVDALGETISTLKFAERVASIELGAARCNKENSQIRELKDEISNLKSALEMKDTELEQLKGGNARALGHNQKPRIASPFRVLRHGKQRRSRFPSTFTEKDAIKMRLLGEERSTSSSSGNPRSPSPPVRRSISTDRGALLRSKVKTETNENQPIAKPSSFLDIQKTAMGSTKKKQLVCQEKNEQDSRKSDFSEMENEQFLWGMPLGGALKVKKACHNFPRNSQNLEPPRVQVGAVETLLRTSRVENGSRNQNKVSNGSMPEFGRSRSTTRRK 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5372414 5381148 - Cp4.1LG02g00300.1 Cpe02g00838 464787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00838 835 SMART ch_5 59 155 IPR001715 GO:0005515
Cpe02g00838 835 Gene3D Kinesin motor domain 331 437 IPR036961 -
Cpe02g00838 835 MobiDBLite consensus disorder prediction 707 738 - -
Cpe02g00838 835 Coils Coil 592 619 - -
Cpe02g00838 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 622 IPR027417 -
Cpe02g00838 835 Gene3D - 43 172 IPR036872 -
Cpe02g00838 835 PANTHER KINESIN-LIKE PROTEIN KLP-3 31 438 - -
Cpe02g00838 835 PANTHER KINESIN-LIKE PROTEIN KLP-3 435 648 - -
Cpe02g00838 835 MobiDBLite consensus disorder prediction 739 754 - -
Cpe02g00838 835 PANTHER KINESIN-LIKE PROTEIN KIN-14F 435 648 - -
Cpe02g00838 835 MobiDBLite consensus disorder prediction 804 827 - -
Cpe02g00838 835 ProSiteProfiles Calponin homology (CH) domain profile. 57 157 IPR001715 GO:0005515
Cpe02g00838 835 MobiDBLite consensus disorder prediction 804 835 - -
Cpe02g00838 835 PANTHER KINESIN-LIKE PROTEIN KIN-14F 649 721 - -
Cpe02g00838 835 SMART kinesin_4 386 593 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe02g00838 835 ProSiteProfiles Kinesin motor domain profile. 436 585 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe02g00838 835 Pfam Kinesin motor domain 435 585 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe02g00838 835 PRINTS Kinesin heavy chain signature 486 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe02g00838 835 PRINTS Kinesin heavy chain signature 535 556 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe02g00838 835 PRINTS Kinesin heavy chain signature 455 472 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe02g00838 835 Gene3D Kinesin motor domain 438 625 IPR036961 -
Cpe02g00838 835 MobiDBLite consensus disorder prediction 672 754 - -
Cpe02g00838 835 Coils Coil 326 364 - -
Cpe02g00838 835 Pfam Calponin homology (CH) domain 60 157 IPR001715 GO:0005515
Cpe02g00838 835 SUPERFAMILY Calponin-homology domain, CH-domain 59 174 IPR036872 -
Cpe02g00838 835 MobiDBLite consensus disorder prediction 673 693 - -
Cpe02g00838 835 PANTHER KINESIN-LIKE PROTEIN KIN-14F 31 438 - -
Cpe02g00838 835 PANTHER KINESIN-LIKE PROTEIN KLP-3 649 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00838 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101221138 680.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00838 Cpe06g00841 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00838 Cpe-Chr2:5372414 Cpe02g01509 Cpe-Chr2:12907685 8.98E-150 dispersed
Cpe02g00838 Cpe-Chr2:5372414 Cpe06g00841 Cpe-Chr6:5396430 4.73E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00838 Cpe_Chr02 FPKM 2.508314 4.627821 1.049142 0.725275 1.186683 0.187472 0.0 0.254423 0.269103 0.227169